BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG08RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig150 1025 0.0
>3x_Contig150
Length = 1017
Score = 1025 bits (517), Expect = 0.0
Identities = 649/676 (96%), Gaps = 14/676 (2%)
Strand = Plus / Minus
Query: 228 aaagaaagcatttcttcaaacgtcgatcccgtaccaatttttgaggccactaaatcactg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 aaagaaagcatttcttcaaacgtcgatcccgtaccaatttttgaggccactaaatcactg 958
Query: 288 ctctcgagtcccaaattttctccaatagcattgaaatctttgacaaacgattcataagcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ctctcgagtcccaaattttctccaatagcattgaaatctttgacaaacgattcataagcc 898
Query: 348 tgtgcttctttttcagtaatgggaacggtatcatgtgttccgacaagagaaaaaagtcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tgtgcttctttttcagtaatgggaacggtatcatgtgttccgacaagagaaaaaagtcta 838
Query: 408 ataaacgtattctgctctgtttcaaacaaatctctcaggtttttcaaatggagtaaaacg 467
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 837 ataaacgtattctgctctgtttcaaacaaatgtgtgaggtttttcaaatggagtaaaacg 778
Query: 468 tataattgtaggtgcgtcagttcttccgatgtttccggaatatcgagttgcaatgggatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tataattgtaggtgcgtcagttcttccgatgtttccggaatatcgagttgcaatgggatg 718
Query: 528 atttcaaataccttatgtaatacgacagaagtatttgagagaataatgttttcaattaat 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atttcaaataccttaggtaatacgacagaagtatttgagagaataatgttttcaattaat 658
Query: 588 ttgttccanacttcatgactgatcttgagtttatctctaatgagattgattatatggata 647
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 657 ttgttccaaacttcatgactgatcttgggtttatctctaatgagattgattatatggata 598
Query: 648 ctgcgtgcaacatctgtgactgtcattacttttttgccatctctaatgtcgattggatc- 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctgcgtgcaacatctgtgactgtcattacttttttgccatctctaatgtcgattggatca 538
Query: 707 aagntgaccaagcgattt-aaactgttatc-aagcatcatctgaaagc-ttacngtact- 762
||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||
Sbjct: 537 aagttgaccaagcgatttaaaactgttatcaaagcatcatctgaaagctttacggtacta 478
Query: 763 aagttctcttc-aaatactcccatg-actttt-actcttnctgggttattttc-agtact 818
||||||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||
Sbjct: 477 aagttctcttcaaaatactcccatgaacttttaactcttcctgggttattttcaagtact 418
Query: 819 tgaat-aaagctgg-acagnacaaggtcctgat-tttgctccaattctttta-gtgtata 874
||||| |||||||| |||| ||||||||||| | |||||||||||||||| |||||||
Sbjct: 417 tgaataaaagctggtacagacaaaggtcctgatatctgctccaattcttttaggtgtata 358
Query: 875 gcggc-acagcgaaat 889
||||| ||||||||||
Sbjct: 357 gcggcaacagcgaaat 342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6596
Number of Sequences: 1807
Number of extensions: 6596
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)