BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG09FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1118 0.0
>3x_Contig1611
Length = 15286
Score = 1118 bits (564), Expect = 0.0
Identities = 705/740 (95%), Gaps = 9/740 (1%)
Strand = Plus / Minus
Query: 86 attctctttccgcggcctatccgcggaacggtgatggatgatattctctcctgttccatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6107 attctctttccgcggcctatccgcggaacggtgatggatgatattctctcctgttccatg 6048
Query: 146 atattctttaatgaacgcggttttccaattgcctcaaaaaaagagcaatatggaacctaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 atattctttaatgaacgcggttttccaattgcctcaaaaaaagagcaatatggaacctaa 5988
Query: 206 tggagtctcatcgaaggacatggaatgattggtttcgtgtgccgtaagataaacacgtac 265
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5987 tggagtctcatcgaaggacatggaatgattggtttcgtgtgccgtaagagaaacacgtac 5928
Query: 266 atgtttgaaaatctaggcacttgtgcttcgggaagttctatttgaggttaatcaagtgat 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5927 atgtttgaaaatctaggcacttgtgcttcgggaagttctatttgaggttaatcaggtgat 5868
Query: 326 ctttgttgttgttgttttttttattctcattttcctttttgattttcctttggttgaggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 ctttgttgttgttgttttttttattctcattttcctttttgattttcctttggttgaggg 5808
Query: 386 aattgcgctttacagaatacgttggggaaaagcgatctccacaatgtgccgggtttccca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 aattgcgctttacagaatacgttggggaaaagcgatctccacaatgtgccgggtttccca 5748
Query: 446 ggtgatctgtagaatttggagcctttagccgcgtctgtgcctgcgacatattttaaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 ggtgatctgtagaatttggagcctttagccgcgtctgtgcctgcgacatattttaaggaa 5688
Query: 506 tatctacgtgtctcgtatttccatttctagtactggatgatcaacctgt-aaaagtagca 564
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5687 tatctacgtgtctcgtatttccatttctagtactggatgatcaacctgtaaaaagtagca 5628
Query: 565 tgtacctgtccgtatttacctgcttggacgtcggttatttttcctcatttatcttttgac 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 5627 tgtacctgtccgtatttacctgcttggacgtcggttattttccctcatttatcttctgac 5568
Query: 625 tacgtgattatcttggcggtaaga-tcaacc-aattccgactaatactgcacaaaaagcc 682
||||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||||||
Sbjct: 5567 tacgtgattatcttggcgg-aagagtcaaccaaatacggactaatactgcacaaaaagcc 5509
Query: 683 atctttacggtggattctttgaggccttatcttttcactcttaattccctggcaagaaat 742
|||| |||| || | |||||| | |||||| |||||||||||| ||||| || || |||
Sbjct: 5508 atctctacgttgta-tctttg-tgtcttatc-tttcactcttaa-tcccttgc-aggaat 5454
Query: 743 ttgtttaccattaacccctgaactgaaataaacgcctgcttttggggttactccacgttt 802
|||| ||||| ||| ||||||||||| || | || ||||| |||| | |||||||||||
Sbjct: 5453 ttgtataccaataagccctgaactgagatgagcggctgctagtgggttaactccacgttt 5394
Query: 803 taatgtcttctttttttcca 822
| |||||||||||| |||||
Sbjct: 5393 tcatgtcttcttttcttcca 5374
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9283
Number of Sequences: 1807
Number of extensions: 9283
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)