BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG09RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1289 1078 0.0
>3x_Contig1289
Length = 5567
Score = 1078 bits (544), Expect = 0.0
Identities = 615/633 (97%), Gaps = 5/633 (0%)
Strand = Plus / Plus
Query: 163 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 63
Query: 223 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 123
Query: 283 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 183
Query: 343 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 243
Query: 403 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 303
Query: 463 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgatgttcatcgcaggc 522
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 304 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 363
Query: 523 cttatttgaaatttgttggaatgac-atctt-anagtctcacccttttctt-ccatctag 579
|||||| ||||||||||| ||||| ||||| | ||||||||||||||||| ||||||||
Sbjct: 364 cttattgaaaatttgttgg-atgacaatcttcaaagtctcacccttttcttcccatctag 422
Query: 580 attggttagcgatcttcatgatatcatcagaaataggttcgaacattnctaatgtcaatt 639
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 attggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaatt 482
Query: 640 tattcagcantgacttcatctttcttgatgcttcttccgcgtcgtaaagttctgttccgt 699
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tattcagcaatgacttcatctttcttgatgcttcttccgcgtcgtaaagttctgttccgt 542
Query: 700 ctggagctaacttgacttccgtttccttcatcttaaatttaggaccccatctatta-ccc 758
||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||| | |
Sbjct: 543 ctggagctaacttgacttctgttttcttcatcttagatttaggaacccatctattagcac 602
Query: 759 ttgggacccatggggcaacctaaacctttggct 791
|||||||| |||||||||||| |||||||||||
Sbjct: 603 ttgggaccaatggggcaacctcaacctttggct 635
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7303
Number of Sequences: 1807
Number of extensions: 7303
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)