BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG10FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1142 0.0
>3x_Contig1776
Length = 26138
Score = 1142 bits (576), Expect = 0.0
Identities = 658/678 (97%), Gaps = 6/678 (0%)
Strand = Plus / Minus
Query: 86 tcctgtattcgcatgttctgcatacttttccatttcattcatttcttttcaattgatatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24334 tcctgtattcgcatgttctgcatacttttccatttcattcatttcttttcaattgatatc 24275
Query: 146 aaattgatgaagtttcagaatgaaattgatatccacgggagatgacatttcattacccga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24274 aaattgatgaagtttcagaatgaaattgatatccacgggagatgacatttcattacccga 24215
Query: 206 atgtgcgacaaacatccttgtttctcacgtgacttgacctccagatggagacagctctcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24214 atgtgcgacaaacatccttgtttctcacgtgacttgacctccagatggagacagctctcc 24155
Query: 266 gttgtacatagcaatcgatcttgcagccaccgttaacatattgtggtgcagtaattacct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24154 gttgtacatagcaatcgatcttgcagccaccgttaacatattgtggtgcagtaattacct 24095
Query: 326 gcagagcgacttcaacctaaatctgaaacagggacgttgctaggaatgttttttaaaagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24094 gcagagcgacttcaacctaaatctgaaacagggacgttgctaggaatgttttttaaaagg 24035
Query: 386 aagcaaacccttaaacagtgtcaagtgcttgtttgttttttacttgcttgttttattttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24034 aagcaaacccttaaacagtgtcaagtgcttgtttgttttttacttgcttgttttattttc 23975
Query: 446 caattgagcttgattttagttgtcgtctctgtgagatttctagggtatctgagttgaggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23974 caattgagcttgattttagttgtcgtctctgtgagatttctagggtatctgagttgaggt 23915
Query: 506 tcttgactcaaagcttcatcatgttttgaggttcctatgataaangctatgcaatgctaa 565
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23914 tcttgactcaaagcttcatcatgttttgaggttcctatgataaaggctatgcaatgctaa 23855
Query: 566 atcangaaatgt-aaggaaatattgctacgttacccttttaatattaacatatatataga 624
|||| | ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 23854 atcagg-aatgtaaagtaaatattgctacgtta-ccttttaatattaacatatatataga 23797
Query: 625 cggattgggcacatcgtgcccactacggcgaaaacgtgaac-attaaggaaaatgaaaca 683
|||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 23796 cggattggccacatcgtgccaactacggcgaaaacgtgaactataaaggaaaatgaaaca 23737
Query: 684 aatgaaagaaactgacgctgggccggcaggaaatt-agcattatggggttcgttcccagt 742
||||||||||||||||||| |||||||| |||||| ||||||||||| | ||| | |||
Sbjct: 23736 aatgaaagaaactgacgct-ggccggcaagaaattaagcattatgggttgcgtcgcaagt 23678
Query: 743 tcaggaaactttgagaac 760
||||||||| |||||||
Sbjct: 23677 acaggaaactatgagaac 23660
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7347
Number of Sequences: 1807
Number of extensions: 7347
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)