BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG11FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1119 1068 0.0
3x_Contig706 369 e-102
>3x_Contig1119
Length = 5045
Score = 1068 bits (539), Expect = 0.0
Identities = 545/547 (99%)
Strand = Plus / Plus
Query: 88 cagaatccatgattgaatttgtcaaatcactatcgcaaaaatctcgtctccttaagctct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4499 cagaatccatgattgaatttgtcaaatcactatcgcaaaaatctcgtctccttaagctct 4558
Query: 148 tgttgagttcattatccaaatcgataaccataaaaaaggatactgtaactacagcagcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4559 tgttgagttcattatccaaatcgataaccataaaaaaggatactgtaactacagcagcat 4618
Query: 208 atctatctgatctatatcaactccacaattcaatagtttctaactctgatactttaattt 267
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4619 atctatctgagctaaatcaactccacaattcaatagtttctaactctgatactttaattt 4678
Query: 268 catccaccttagtgaacgctgaatatgaagtagatccagaagtggaaacatcagtacttg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4679 catccaccttagtgaacgctgaatatgaagtagatccagaagtggaaacatcagtacttg 4738
Query: 328 ctatcaataatgatgttaagaaagttataaaaattattacacagctaaacggttcagatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4739 ctatcaataatgatgttaagaaagttataaaaattattacacagctaaacggttcagatg 4798
Query: 388 agtccaagttgaaatggatacaggtatggtcaaataagtggagttctttgaataattagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4799 agtccaagttgaaatggatacaggtatggtcaaataagtggagttctttgaataattagt 4858
Query: 448 ttagttttatctgtcttctgttttaaaggcatctgaaagtaatatataggtacaccgtac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4859 ttagttttatctgtcttctgttttaaaggcatctgaaagtaatatataggtacaccgtac 4918
Query: 508 atacaaataccaaatcataattccacagtctagtcagatgcagttcaagtagggtgaatt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4919 atacaaataccaaatcataattccacagtctagtcagatgcagttcaagtagggtgaatt 4978
Query: 568 actttcaccaatcatcaccgttgtctatatcatcgtcacgagcaactttattctttcttt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4979 actttcaccaatcatcaccgttgtctatatcatcgtcacgagcaactttattctttcttt 5038
Query: 628 ggtttaa 634
|||||||
Sbjct: 5039 ggtttaa 5045
>3x_Contig706
Length = 2070
Score = 369 bits (186), Expect = e-102
Identities = 268/287 (93%), Gaps = 7/287 (2%)
Strand = Plus / Minus
Query: 598 catcgtcacgagcaactttattctttctttggtttaaagccgcagctagggcatcagcca 657
|||||||||||||||| |||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 2070 catcgtcacgagcaacgttatccgt-ctttggtttaaagccgcagctagggcatcagcca 2012
Query: 658 atgacgcatgatcaccaacaggtccgtcagttgacccgcctgtgggttgagataccngcg 717
| |||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 2011 aggacgcaggagcaccaacaggtccgccagttgacccgcctgtgggttgagataccggcg 1952
Query: 718 catcactacgaactttcttgt-acaaaggacttggcttttcaagttgagatttatccacc 776
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 catcactacgaac-ttcttgtaacaaaggacttggcttttcaagttgagatttatccacc 1893
Query: 777 ttacggagggaattcaga-cagctncacgaatcgattgct-atatagcatcccttncagc 834
|||||||||||||||||| ||||| |||||||||| |||| ||| ||||||||| ||||
Sbjct: 1892 ttacggagggaattcagaccagctccacgaatcga-tgctaataaggcatcccttccagc 1834
Query: 835 atcaccagtattttcaacaaaaccagatcc-gcttcaggttgattaa 880
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1833 atcaccagtattttcaacaaaaccagatcctgcttcaggttgattaa 1787
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6502
Number of Sequences: 1807
Number of extensions: 6502
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)