BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG11RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1334 0.0
>3x_Contig1786
Length = 33838
Score = 1334 bits (673), Expect = 0.0
Identities = 767/793 (96%), Gaps = 4/793 (0%)
Strand = Plus / Minus
Query: 48 tgctctgactctgcc-catctcgcttcgtctttt-atagcttctagaatcttgcaaaggc 105
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5533 tgctctgactctgccacagctcgcttcgtcttttcatagcttctagaatcttgcaaaggc 5474
Query: 106 tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 tctaatctagccaagtaccgctttaacgtatcttccaaaggagggattggcaacctgggc 5414
Query: 166 aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 aaaacttcctggttcgtatctttaatagatggcataacaatatgttaacgtccttagttg 5354
Query: 226 atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353 atggctcttagcactttactcctgtgaatggtatccacaaatagcaagactttagggaga 5294
Query: 286 ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5293 ggaaattttaatcgatactccgaacagtcagctatttatatatacgtatataacttatga 5234
Query: 346 gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5233 gttctatccttcattgcaaatcatcaatacatatgtcctttaatcatttgagttagtcat 5174
Query: 406 gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5173 gcaatatttgagaattagcgcccttctcttaactcatccctactacgatttgttttcttt 5114
Query: 466 ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5113 ttccgaaacatccggacagtcatccatcatcgaccttcaccaacttttctccatttaacc 5054
Query: 526 aaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaacaatg 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5053 aaataaaggttttgatgatcagctttatgcgaaaaaacctttgaatgaccacaaacaagg 4994
Query: 586 gaagcagaataaaacggagtagtcagatcagaccgtgcacttagtttccggttagggtaa 645
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4993 gaagcagaataaaacggagtagtcagaacagaccgtgcacttagtttccggttagggtaa 4934
Query: 646 tcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagtggca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933 tcacaagatagggatactgggtaatgcagacagagacctttcgtattattattagtggca 4874
Query: 706 gtaagtagatataacgc-gtacacacagagagagagataccgaggaagagaatttctaga 764
||||||||| | | || | |||||||||||||||||||| ||| |||||| | |||||
Sbjct: 4873 gtaagtagagaaacggcagaacacacagagagagagatacagagaaagagatatactaga 4814
Query: 765 tagatccggggaatggataatttcattacccattggacctatgcgctaaaacaattgatt 824
||||| | |||||||||||||| || ||||| | |||||||||||||||||| |||||
Sbjct: 4813 tagat-ctgggaatggataattcaatagcccatggaacctatgcgctaaaacaagtgatt 4755
Query: 825 ggtcgcagggctt 837
|||||| ||||||
Sbjct: 4754 ggtcgcggggctt 4742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6362
Number of Sequences: 1807
Number of extensions: 6362
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)