BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG12FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig907 511 e-145
3x_Contig1195 200 4e-51
>3x_Contig907
Length = 3418
Score = 511 bits (258), Expect = e-145
Identities = 306/318 (96%), Gaps = 3/318 (0%)
Strand = Plus / Plus
Query: 85 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagaaagcgaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3095 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagacagcgaaaa 3154
Query: 145 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 3214
Query: 205 accatatatttagttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 264
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 accatagaagtagttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 3274
Query: 265 tattttgtggaaacatacaagccttttagggtcatcgaatgggaaatgaactgcagctag 324
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3275 tattttgtgg-aacatacaagccttttagggtcatcgaatgggaaatgaactgaagctag 3333
Query: 325 catgtaatgacggatcatataagtggaaaaaactgtttgcggtattatcacagtagtctt 384
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 3334 aatgtaatgacggataatataaaaggaaaaaa-tgtttgcggtattatcacagtagtctt 3392
Query: 385 aacatcatgtgcgtgctc 402
|||||||||||||||||
Sbjct: 3393 -acatcatgtgcgtgctc 3409
>3x_Contig1195
Length = 5875
Score = 200 bits (101), Expect = 4e-51
Identities = 166/184 (90%), Gaps = 3/184 (1%)
Strand = Plus / Plus
Query: 526 attttccaatattgtgtataatatgcctttgaacatgtncaaacgattcaccctatccga 585
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 9 attttccaatattgtgtataatatgcctttgaacatgtccaaacgattcaccctaaccga 68
Query: 586 attgatagacacgtattttacccttttcccttgatttaaatctaatttc-aacattttgc 644
||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 69 attgaaggacacgtattttacccttttcccttgattaaaatctaaattcaaacattttgc 128
Query: 645 cagat-aagtgaaatttgtcggttaattcatgttattccagaccaaggaaaggcctgatc 703
||||| ||||||| ||||||| | || |||||||| | ||| | |||||||| ||||||
Sbjct: 129 cagataaagtgaagtttgtcgaattatccatgttatccgaga-cgaggaaaggtctgatc 187
Query: 704 gctt 707
||||
Sbjct: 188 gctt 191
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7792
Number of Sequences: 1807
Number of extensions: 7792
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)