BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZG12RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1239 0.0
>3x_Contig1502
Length = 14970
Score = 1239 bits (625), Expect = 0.0
Identities = 692/706 (98%), Gaps = 7/706 (0%)
Strand = Plus / Minus
Query: 44 cttggaatcaaatgcttctgaacttgttcttcagtaacaaatgaatataggaattctttc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6047 cttggaatcaaatgcttctgaacttgttcttcagtaacaaatgaatataggaattctttc 5988
Query: 104 aggaaaagttccaaacagaatgctgaaggcaactctttggcgaggataacttctttaccg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5987 aggaaaagttccaaacagaatgctgaaggcaactctttggcgaggataacttctttaccg 5928
Query: 164 agatactctactaatctttcagtcaactgttccagcgaatgcaaaggaattggtttcttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5927 agatactctactaatctttcagtcaactgttccagcgaatgcaaaggaattggtttcttg 5868
Query: 224 gcttggcactgtaatacagaatgaactagggatcccagagtgataactacaccagtattt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5867 gcttggcactgtaatacagaatgaactagggatcccagagtgataactacaccagtattt 5808
Query: 284 ggaagcttcaatttcgagtagttgtctaataacaatggaataacatcatcaacaatatta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5807 ggaagcttcaatttcgagtagttgtctaataacaatggaataacatcatcaacaatatta 5748
Query: 344 gattttgaatctgtagtagattccaggttcacacaactaacgaaactcttaacagattgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5747 gattttgaatctgtagtagattccaggttcacacaactaacgaaactcttaacagattgt 5688
Query: 404 tggaagacacagagcctcaatctcttacgatgttggttttgcttattcaaatctttctta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5687 tggaagacacagagcctcaatctcttacgatgttggttttgcttattcaaatctttctta 5628
Query: 464 aaaggttcatgggtatctangatagtctcgatagctgctacaagcatcacataagcgtgg 523
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5627 aaaggttcatgggtatctaggatagtctcgatagctgctacaagcatcacataagcgtgg 5568
Query: 524 actatttcttttc-ataaacattgaagagctcatctgattgttcataaatcanattcaaa 582
||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5567 actatttctttccaataaacattgaagagctcatctgattgttcataaatcaaattcaaa 5508
Query: 583 aatttaagcacccattcccataattttaaatantcagtaacagctttagaaaggcagttt 642
|||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 5507 aatttaagcacccattccaataaatttaaataatcagtaacagctttagaagggcagttt 5448
Query: 643 tgagtgctggcagtcttgat-acaaaatcacttat-tttttac-atagatggggtc-gtt 698
|||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||
Sbjct: 5447 tgagtgctggcagtcttgataacaaaatcacttatctttttacaatagatggggtcggtt 5388
Query: 699 tcaaac-attggaccagga-tgaagtgactagaacttttgattctt 742
|||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 5387 tcaaacaattggaccaggattgaagtgactagaacttttgattctt 5342
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7489
Number of Sequences: 1807
Number of extensions: 7489
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)