BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH02FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1516 0.0
>3x_Contig1669
Length = 15503
Score = 1516 bits (765), Expect = 0.0
Identities = 803/813 (98%), Gaps = 2/813 (0%)
Strand = Plus / Minus
Query: 88 acgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtgaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6026 acgctatcagaattgttcccagattggacaaatgatgatttaattgatttagtccgtgaa 5967
Query: 148 tatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatgggac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5966 tatgatgatctagaaaccatagttgataagataactactggagcagtgacaaaatgggac 5907
Query: 208 gaagtgaataaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctcat 267
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5906 gaagtgaagaaaccatctaaaaaggaaaagcctgcatcgcatatagaacaccaatctcat 5847
Query: 268 agttctcatcaacagctgcaacaacaagccgcatcacacctggaccctgaagattctcct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5846 agttctcatcaacagctgcaacaacaagccgcatcacacctggaccctgaagattctcct 5787
Query: 328 tctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttcagt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5786 tctctaataaatcaacatcattcgcatcaaagacaatctagatccacctctaagttcagt 5727
Query: 388 aataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataataaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 aataacagcgccaatggcaaatcagtgcaacaaagacagcaacaccagtcaaataataaa 5667
Query: 448 gataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaatct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5666 gataacaagaagcagccttcaaaggatagtttgaagcctgctccattaccatctaaatct 5607
Query: 508 aacgctggtaataacgcggggtcttgggccgccgtattggcagaaaagaaaaaggctcat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5606 aacgctggtaataacgcggggtcttgggccgccgtattggcagaaaagaaaaaggctcat 5547
Query: 568 gaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaatgaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5546 gaaaagaagattgaccatacaaagtcgtctaatacaattgcacatgaatctactaatgaa 5487
Query: 628 caatctgaatctaatgaacataccgaaccaactgaagttgaagttgcacctgcccagcct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 caatctgaatctaatgaacataccgaaccaactgaagttgaagttgcacctgcccagcct 5427
Query: 688 gttgactctgcaccagaatctgtcagccatcaacatgcgccagaatctgaatcaatcgcc 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 gttgactctgcaccagaatctgtcagccatcaacatgcgccagaatctgaatcaatcgcc 5367
Query: 748 accacatacggtgattctaagccaaagagttgggctgacattgcaagcgcaaagagcaga 807
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5366 accacaaacggtgattctaagccaaagagttgggctgacattgcaagcgcaaagagcaga 5307
Query: 808 caaagacaactacagcaacagtatcagaagcatc-acagtcacaaaaat-taagccattg 865
||||||||||||||||||||| | ||||||| | |||| |||||||| ||||||||||
Sbjct: 5306 caaagacaactacagcaacagaacaagaagcaacaacagcaacaaaaatctaagccattg 5247
Query: 866 gacaactttgatgctttgaaggaagaagttgat 898
|||||||||||||||||||||||||||||||||
Sbjct: 5246 gacaactttgatgctttgaaggaagaagttgat 5214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6929
Number of Sequences: 1807
Number of extensions: 6929
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)