BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZH02RM1.SCF screened BAC_end (864 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1353 1013 0.0 >3x_Contig1353 Length = 8234 Score = 1013 bits (511), Expect = 0.0 Identities = 614/633 (96%), Gaps = 12/633 (1%) Strand = Plus / Plus Query: 48 tgttaaattctacttatgtacgttgacaacacctatgcacaatcattgctcatatcatag 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4663 tgttaaattctacttatgtacgttgacaacacctatgcacaatcattgctcatatcatag 4722 Query: 108 ggaaaagagggacctcgttgtagattaaaatagtgagggatttacatttgtacactgcga 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4723 ggaaaagagggacctcgttgtagattaaaatagtgagggatttacatttgtacactgcga 4782 Query: 168 aatgtcgttaaataaagtatgttattgtgtgtgtgctggaatatggcttctgatctcctc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4783 aatgtcgttaaataaagtatgttattgtgtgtgtgctggaatatggcttctgatctcctc 4842 Query: 228 agtttgtctcttctttgtacatttcacttcgtggtaacattgggtctttgagatttgaca 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4843 agtttgtctcttctttgtacatttcacttcgtggtaacattgggtctttgagatttgaca 4902 Query: 288 aaagtatactaacagttcaattaaaataatgttcgagtatacgtgatgcaatgccgatga 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4903 aaagtatactaacagttcaattaaaataatgttcgagtatacgtgatgcaatgccgatga 4962 Query: 348 ctttgttgaaatatgatgataaggtgtgaatttgcttcctcttcatggggtttcccttta 407 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 4963 ctttgttgaaatatgatgataaggtgtgaatttgcttcctcttcagggggtttcccttta 5022 Query: 408 attttaggtcgttaattcatcattgtctttcagcactgtctgcatgtattatttgaacat 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5023 attttaggtcgttaattcatcattgtctttcagcactgtctgcatgtattatttgaacat 5082 Query: 468 tattttctctctcgcagccctgctgtgacaccttagatgcatatcagagaatat-aacta 526 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 5083 tattttctctctcgcagccctgctgtgacaccttagagcaatatcagagaatataaacta 5142 Query: 527 ntcgtcgttggtggcggtggtgttggtaattc-gcgttgacgatccaa-taattc-atcg 583 |||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||| Sbjct: 5143 gtcgtcgttggtggcggtggtgttggtaaatcggcgttgacgatccaattaattcaatcg 5202 Query: 584 ca-ttcgttgacg-atatgacccg-ctatcg-agactnctatag-aaacaagc-gtcatt 637 || |||||||||| |||||||||| |||||| ||||| |||||| |||||||| |||||| Sbjct: 5203 catttcgttgacgaatatgacccgactatcgaagactcctatagaaaacaagcggtcatt 5262 Query: 638 gatgacaa-gtctcaa-tttggatattttagat 668 |||||||| ||||||| |||||||||||||||| Sbjct: 5263 gatgacaaggtctcaattttggatattttagat 5295 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6598 Number of Sequences: 1807 Number of extensions: 6598 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 864 length of database: 10,358,551 effective HSP length: 16 effective length of query: 848 effective length of database: 10,329,639 effective search space: 8759533872 effective search space used: 8759533872 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)