BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZH02RM1.SCF screened BAC_end
         (864 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1353                                                        1013   0.0  

>3x_Contig1353 
          Length = 8234

 Score = 1013 bits (511), Expect = 0.0
 Identities = 614/633 (96%), Gaps = 12/633 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgttaaattctacttatgtacgttgacaacacctatgcacaatcattgctcatatcatag 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663 tgttaaattctacttatgtacgttgacaacacctatgcacaatcattgctcatatcatag 4722

                                                                        
Query: 108  ggaaaagagggacctcgttgtagattaaaatagtgagggatttacatttgtacactgcga 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4723 ggaaaagagggacctcgttgtagattaaaatagtgagggatttacatttgtacactgcga 4782

                                                                        
Query: 168  aatgtcgttaaataaagtatgttattgtgtgtgtgctggaatatggcttctgatctcctc 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4783 aatgtcgttaaataaagtatgttattgtgtgtgtgctggaatatggcttctgatctcctc 4842

                                                                        
Query: 228  agtttgtctcttctttgtacatttcacttcgtggtaacattgggtctttgagatttgaca 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843 agtttgtctcttctttgtacatttcacttcgtggtaacattgggtctttgagatttgaca 4902

                                                                        
Query: 288  aaagtatactaacagttcaattaaaataatgttcgagtatacgtgatgcaatgccgatga 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 aaagtatactaacagttcaattaaaataatgttcgagtatacgtgatgcaatgccgatga 4962

                                                                        
Query: 348  ctttgttgaaatatgatgataaggtgtgaatttgcttcctcttcatggggtttcccttta 407
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4963 ctttgttgaaatatgatgataaggtgtgaatttgcttcctcttcagggggtttcccttta 5022

                                                                        
Query: 408  attttaggtcgttaattcatcattgtctttcagcactgtctgcatgtattatttgaacat 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 attttaggtcgttaattcatcattgtctttcagcactgtctgcatgtattatttgaacat 5082

                                                                        
Query: 468  tattttctctctcgcagccctgctgtgacaccttagatgcatatcagagaatat-aacta 526
            |||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||
Sbjct: 5083 tattttctctctcgcagccctgctgtgacaccttagagcaatatcagagaatataaacta 5142

                                                                        
Query: 527  ntcgtcgttggtggcggtggtgttggtaattc-gcgttgacgatccaa-taattc-atcg 583
             |||||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||
Sbjct: 5143 gtcgtcgttggtggcggtggtgttggtaaatcggcgttgacgatccaattaattcaatcg 5202

                                                                        
Query: 584  ca-ttcgttgacg-atatgacccg-ctatcg-agactnctatag-aaacaagc-gtcatt 637
            || |||||||||| |||||||||| |||||| ||||| |||||| |||||||| ||||||
Sbjct: 5203 catttcgttgacgaatatgacccgactatcgaagactcctatagaaaacaagcggtcatt 5262

                                             
Query: 638  gatgacaa-gtctcaa-tttggatattttagat 668
            |||||||| ||||||| ||||||||||||||||
Sbjct: 5263 gatgacaaggtctcaattttggatattttagat 5295


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6598
Number of Sequences: 1807
Number of extensions: 6598
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 864
length of database: 10,358,551
effective HSP length: 16
effective length of query: 848
effective length of database: 10,329,639
effective search space: 8759533872
effective search space used: 8759533872
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)