BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH03FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 1396 0.0
>3x_Contig488
Length = 1926
Score = 1396 bits (704), Expect = 0.0
Identities = 798/819 (97%), Gaps = 8/819 (0%)
Strand = Plus / Plus
Query: 87 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tattcatagagatcggagacgccaggaagttcgataaatcctgatcgacagaatgtgacg 659
Query: 147 aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aatccagagaatgtagagattggtgtgaatatccgctattagtatgttttgatattttac 719
Query: 207 cattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cattgatatccagtcctacagcggaattgccttgatgtgattgttttttccttcttggcg 779
Query: 267 cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cacgcttcttatgacacgggcagtgatccggatcattcttacaaacacatcccgattctt 839
Query: 327 ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ctcttgccttctgtgcgatccgtttcttctcttgtcgcccacaagtgcattggcccgatg 899
Query: 387 gattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggcctac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gattcgcattcctgttcttccgtagttctttacaatgagcacaagtcgttgacggcctac 959
Query: 447 ctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgtc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ctttcggtttaatcatagtcaacggctgatctgtatggttacatgtagtcactctgtgtc 1019
Query: 507 ctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ctctaatacacctttcacaggcatatttcacaccgttgataagaaccattgtgtgctatt 1079
Query: 567 tgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tgaatgcgatacagaatgtgtctgtgctgtcttcagtgaataataaccacaaaaaaagct 1139
Query: 627 tcaaaagtcagcagtaagaagccagcaaagggacaatgaaaatgacaattagggagtgtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tcaaaagtcagcagtaagaagccagcaaagggacaatgaaaatgacaattagggagtgtg 1199
Query: 687 aatattaagacaaatgaattagattaggtcactccaatatgtgtngtttctttttctttc 746
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1200 aatattaagacaaatgaattagattaggtcactccaatatgtgtgttttctttttctttc 1259
Query: 747 cttaaa-ttgattaagccgttgtctgactaataatcct-cccggaagaggagag-aagaa 803
|||||| |||||||||||||||||||||||| |||||| || | ||||| |||| |||||
Sbjct: 1260 cttaaagttgattaagccgttgtctgactaaaaatcctaccagaaagagaagagaaagaa 1319
Query: 804 taaaaggatg-tattcagccttat-attgggggttggatcctgagaaacgtg-acag-at 859
||||||| | ||||||||||||| |||||||||||||| ||||| |||||| |||| ||
Sbjct: 1320 aaaaaggaagatattcagccttataattgggggttggatactgag-aacgtgaacagaat 1378
Query: 860 tagccatagacagcattttctctatcaatctccccaaat 898
||||| |||||||| ||||||||||||||||| |||||
Sbjct: 1379 aagccagagacagcagtttctctatcaatctcctcaaat 1417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5961
Number of Sequences: 1807
Number of extensions: 5961
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)