BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZH03RM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1720                                                        1324   0.0  

>3x_Contig1720 
          Length = 19870

 Score = 1324 bits (668), Expect = 0.0
 Identities = 750/768 (97%), Gaps = 7/768 (0%)
 Strand = Plus / Minus

                                                                         
Query: 49    cttttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagac 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16593 cttttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagac 16534

                                                                         
Query: 109   tttcaagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaa 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16533 tttcaagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaa 16474

                                                                         
Query: 169   aacctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaa 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16473 aacctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaa 16414

                                                                         
Query: 229   tttctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactt 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16413 tttctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactt 16354

                                                                         
Query: 289   tctcctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcaca 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16353 tctcctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcaca 16294

                                                                         
Query: 349   aaacagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaacttt 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16293 aaacagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaacttt 16234

                                                                         
Query: 409   cagattacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaag 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16233 cagattacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaag 16174

                                                                         
Query: 469   ctattgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgat 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173 ctattgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgat 16114

                                                                         
Query: 529   ggtactctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaa 588
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16113 ggtactctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaa 16054

                                                                         
Query: 589   tgtttgcaattgacgccaaaaggaatttttggagtttctttcataccatccangctgt-a 647
             ||||||||||||||||||| ||||| ||||||||||  |||||||||||||| ||||| |
Sbjct: 16053 tgtttgcaattgacgccaagaggaa-ttttggagttcttttcataccatcca-gctgtaa 15996

                                                                         
Query: 648   cagatgataataacaatagtacgctacaatggctaaacgtgcatgtgcattcacatacgt 707
             ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 15995 cagatgaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgt 15936

                                                                         
Query: 708   tcacatggaccgatacgcagacattgttttttgttaaagaagtttatgtcaatttggaca 767
               |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 15935 caacatggaccgatacgcagacattg-tttttgttaaagaag-ttatgtcaatatggaca 15878

                                                             
Query: 768   cattaaaa-gttgggataccttaacatcggaaggactgccattgcact 814
             || ||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct: 15877 caataaaacgttggaataccttaacatcgg-aggactgccattgcact 15831


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7845
Number of Sequences: 1807
Number of extensions: 7845
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)