BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH04FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1296 0.0
>3x_Contig1629
Length = 12481
Score = 1296 bits (654), Expect = 0.0
Identities = 713/730 (97%), Gaps = 2/730 (0%)
Strand = Plus / Minus
Query: 89 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 149 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 209 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 10313
Query: 269 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 10253
Query: 329 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgctttgac 388
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10252 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgctttgac 10193
Query: 389 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 10133
Query: 449 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 10073
Query: 509 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 10013
Query: 569 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 9953
Query: 629 gtccaagaaagatgctttcaccaagtactctgcttagtacgctgaaaacggtgcccaagt 688
||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9952 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 9893
Query: 689 cgacagagaattggccagaatcaagaagtacgcttcttgttgttagagtcctggttcaca 748
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct: 9892 cgacagagaattggccagaatcaagaagtacgcttc-tgttgttagagtcttggtccaca 9834
Query: 749 ccccaatcagaaagacttcattgtctcaaaagaaagcttatttggcctgaattccaattg 808
||| | ||||||||||| |||||||||||||||| ||| |||||| ||||| ||||||||
Sbjct: 9833 cccaagtcagaaagactccattgtctcaaaagaaggctcatttgg-ctgaaatccaattg 9775
Query: 809 tacgggggtt 818
|||| ||||
Sbjct: 9774 aacggtggtt 9765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7243
Number of Sequences: 1807
Number of extensions: 7243
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)