BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH04RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1306 0.0
>3x_Contig1726
Length = 20144
Score = 1306 bits (659), Expect = 0.0
Identities = 788/819 (96%), Gaps = 10/819 (1%)
Strand = Plus / Minus
Query: 45 aatacttgcagcccatgttcaaaaagtaccaagaggtattgattagcatgctcagtacgc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388 aatacttgcagcccatgttcaaaaagtaccaagaggtattgattagcatgctcagtacgc 11329
Query: 105 tctatatcatgcgtaattataccaataacatcgaaaatttgatggtcaaattttagcacc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11328 tctatatcatgcgtaattataccaataacatcgaaaatttgatggtcaaattttagcacc 11269
Query: 165 acgtttaatttcaattccgtcctgcgaatcggtaactcttcagctatatcatcatttttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11268 acgtttaatttcaattccgtcctgcgaatcggtaactcttcagctatatcatcatttttc 11209
Query: 225 ataaactgcaagaagcctttttgtttggagattgtataaccgttctgtataaccttatga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11208 ataaactgcaagaagcctttttgtttggagattgtataaccgttctgtataaccttatga 11149
Query: 285 ttttccttagcagaaaaaactgtcaatacctcatcatccatatcatcatcaagagctcta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11148 ttttccttagcagaaaaaactgtcaatacctcatcatccatatcatcatcaagagctcta 11089
Query: 345 tgaagtaaagaatcatctgacggcaagtttaacggtatgccatattctttgaacacgcta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11088 tgaagtaaagaatcatctgacggcaagtttaacggtatgccatattctttgaacacgcta 11029
Query: 405 ttttcagatgttttggtgtataattcgtaaaccaacagaaagttgttcttggttataaca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11028 ttttcagatgttttggtgtataattcgtaaaccaacagaaagttgttcttggttataaca 10969
Query: 465 tagtagaaccgcttatcatctattactggatcgcanaattggncctgt-aggaaaccctt 523
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct: 10968 tagtagaaccgcttatcatctattactggatcgcaaaattgg-cctgtaaggaaaccctt 10910
Query: 524 tacctcagtgccaagaggtaaattatctcttataccaaaattgacaccaaacagttcaat 583
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10909 tacctcagtgccaagaggtaaattatctctaataccaaaattgacaccaaacagttcaat 10850
Query: 584 agactcagcagtacgttcgtgacatgctaatggagcanaggggttggcttggntaacaaa 643
||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 10849 agactcagcagtacgttcgtgacatgctaatggagcaaagggtttggcttggtaaacaaa 10790
Query: 644 aagtcttgtctttgt-attaaaaggaagtggtttgaattaggtggcctcatttgtttgaa 702
||||||||||||||| || |||||||||||||||||||||||| |||||| |||||||||
Sbjct: 10789 aagtcttgtctttgtaataaaaaggaagtggtttgaattaggt-gcctcaattgtttgaa 10731
Query: 703 tgatattctcatcgataccctctatacaacgtccgggaaagttg-aatgattgccgtggt 761
|||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||
Sbjct: 10730 tgatatcctcatcgataccctctatacaacgtccggg-aagttgaaatgattgcggtgg- 10673
Query: 762 ttttactgggagcatcatcgnctat-agtcctttgtttagccccaattggcccttaccct 820
|||||||||||||||||||| |||| |||| | ||||||||| |||||| |||||| |||
Sbjct: 10672 ttttactgggagcatcatcgtctataagtcttctgtttagcctcaattgcccctta-cct 10614
Query: 821 tcaggtccggtttaatccttcaccttaaaaattgaaaac 859
||| |||| |||| |||||||| | |||| | |||||||
Sbjct: 10613 tcatgtcctgttt-atccttcaacataaagaatgaaaac 10576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6586
Number of Sequences: 1807
Number of extensions: 6586
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)