BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH05FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1485 0.0
>3x_Contig1767
Length = 23302
Score = 1485 bits (749), Expect = 0.0
Identities = 786/797 (98%), Gaps = 1/797 (0%)
Strand = Plus / Minus
Query: 86 atttcttatatataaagctttttccctcgctggaagattttcaagacttcgtcttttata 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18503 atttcttatatataaagctttttccctcgctggaagattttcaagacttcgtcttttaga 18444
Query: 146 agcgaaaaggccgaaacgtagtattattggttcgtatacagtgatactggtagtgaaact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18443 agcgaaaaggccgaaacgtagtattattggttcgtatacagtgatactggtagtgaaact 18384
Query: 206 tacttttatttatttagttgcacgtgatctaaaatggttagataatatatgctttaccta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18383 tacttttatttatttagttgcacgtgatctaaaatggttagataatatatgctttaccta 18324
Query: 266 cttctttctgtggtatattttgttcaagaacaaggttagaacttcggccttgaacccacg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18323 cttctttctgtggtatattttgttcaagaacaaggttagaacttcggccttgaacccacg 18264
Query: 326 ggattcgtcgatgttagcgattttctctcttaagttggaagcggtttcttcttcgtactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18263 ggattcgtcgatgttagcgattttctctcttaagttggaagcggtttcttcttcgtactt 18204
Query: 386 gtggtagatgtcttggatgttcaattcgttgaatacagctctacatttttgttccttttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18203 gtggtagatgtcttggatgttcaattcgttgaatacagctctacatttttgttccttttc 18144
Query: 446 agaatcctttctaccgtagttttcgtccaagatatctctttgttcttttgtagcattctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18143 agaatcctttctaccgtagttttcgtccaagatatctctttgttcttttgtagcattctt 18084
Query: 506 caatgcaacgttgatgacccaagaacatttgttgtcttggatatcggtaccaatcttacc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18083 caatgcaacgttgatgacccaagaacatttgttgtcttggatatcggtaccaatcttacc 18024
Query: 566 gatatcttctggtttaccgaaacaatccaagaaatcgtcttggatttggaaatattctcc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18023 gatatcttctggtttaccgaaacaatccaagaaatcgtcttggatttggaaatattctcc 17964
Query: 626 caatgggatcaatacgtcgctggcctgtttcaagtcctttgagtcggtaataccggcagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17963 caatgggatcaatacgtcgctggcctgtttcaagtcctttgagtcggtaataccggcagc 17904
Query: 686 aaacatggccagtgccactgctaagtagaaagagtagtatgcagtcttgaagattacgat 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 17903 aaacatggccagtgccactgctaagtagaaagagtagtatgcagtcttgaagataacgat 17844
Query: 746 gatagaatgcttttccaaagagaacttggattagtcgactttgtcctctgttgcagtgat 805
|| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 17843 gaaggaatgcttttccaaagagaacttggataagtcgactttgtcctctggtgcagtgat 17784
Query: 806 caaatccaacaactgacccatttcggtttgaaaagttacgtcttggaacatttcc-atag 864
|||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| ||||
Sbjct: 17783 caaatccaacaactgacccaattcggtttgaaaagtaacgtcatggaacaattccaatag 17724
Query: 865 atcgacgtagtatggct 881
|||||||||||||||||
Sbjct: 17723 atcgacgtagtatggct 17707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7195
Number of Sequences: 1807
Number of extensions: 7195
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)