BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH05RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1469 0.0
>3x_Contig1801
Length = 57606
Score = 1469 bits (741), Expect = 0.0
Identities = 810/824 (98%), Gaps = 7/824 (0%)
Strand = Plus / Plus
Query: 50 agagacatctaaagatttatgaagtttgataagccaaagttctttttgcttcaagttctt 109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21206 agagacatctaaagatttaggaagtttgataagccaaagttctttttgcttcaagttctt 21265
Query: 110 aggcttcacgaatgatttcaaatgtgtacatttcttatagttttcaggtggaacgaaaac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21266 aggcttcacgaatgatttcaaatgtgtacatttcttatagttttcaggtggaacgaaaac 21325
Query: 170 gtccgttacagtttctgatgatccatcattatcgctgtcgctatcactgatgtattcctt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21326 gtccgttacagtttctgatgatccatcattatcgctgtcgctatcactgatgtattcctt 21385
Query: 230 tgaaagagttttgtcgaccttggccattgtttgagatatttcttataacgttttgcgagt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21386 tgaaagagttttgtcgaccttggccattgtttgagatatttcttataacgttttgcgagt 21445
Query: 290 ggaataatattacagggaagggtgtaacaaaaactcacctgaactagttaaactgtaatt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21446 ggaataatattacagggaagggtgtaacaaaaactcacctgaactagttaaactgtaatt 21505
Query: 350 ggaaccctatgaccacacagaacctcacttatctgcctctgtgtgtctatttgaatctgc 409
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21506 ggaaccctaggaccacacagaacctcacttatctgcctctgtgtgtctatttgaatctgc 21565
Query: 410 aatgagatgagatgagcttaaaccgaattttttcatcttgggaaagacttttctttcttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21566 aatgagatgagatgagcttaaaccgaattttttcatcttgggaaagacttttctttcttt 21625
Query: 470 ttagacgttacccgggaaaatgcacgtggttaacacgtggaacaaactatcgtattcatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21626 ttagacgttacccgggaaaatgcacgtggttaacacgtggaacaaactatcgtattcatg 21685
Query: 530 aaatctgttccagttcatcacaaaccatcgagaaatggtatgtccgacttgaacagcctt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21686 aaatctgttccagttcatcacaaaccatcgagaaatggtatgtccgacttgaacagcctt 21745
Query: 590 cgagcaacatttattggatcactaatactatgattcccgttgaatggtatgacatcgatg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21746 cgagcaacatttattggatcactaatactatgattcccgttgaatggtatgacatcgatg 21805
Query: 650 ccctaaagtac-tggtttactgtattatcatgtcgaacgacgcaattattccaaaaa-tt 707
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 21806 ccct-aagtacttggtttactgtattatcatgtcgaacgacgcaattattccaaaaattt 21864
Query: 708 tttccatgcttcttcgacacgaagaatat-aaaaggctgggtatgagatacaaactanac 766
||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| ||
Sbjct: 21865 tttccatgcttcttcgacacgaagaatataaaaaggctggtaatgagaaacaaactagac 21924
Query: 767 atgttaaactcatcata-catttatccaggttaggtattgaaaagttcttgta-gttgtt 824
||||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 21925 atgttaaactcatcaaaccatttatccaggttaggtattgaaaagttc-tgtaggttgtt 21983
Query: 825 ctctagcctcacttgctgttggcaagtgagctttatagtatcct 868
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21984 ctctagcctcacttgctgttggcaagtgagctttatagtatcct 22027
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7395
Number of Sequences: 1807
Number of extensions: 7395
Number of successful extensions: 274
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)