BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH06RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1431 1368 0.0
>3x_Contig1431
Length = 10954
Score = 1368 bits (690), Expect = 0.0
Identities = 756/772 (97%), Gaps = 5/772 (0%)
Strand = Plus / Minus
Query: 48 tacggaagcaagattttgcattgtcgaatgcatcattattagaatactcgtgcccttgta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 tacggaagcaagattttgcattgtcgaatgcatcattattagaatactcgtgcccttgta 3003
Query: 108 aagtgtaagcgtaagcaaagaatgggtccaattgaattgcctttccgaaagcagtaatgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 aagtgtaagcgtaagcaaagaatgggtccaattgaattgcctttccgaaagcagtaatgg 2943
Query: 168 cttcgtcgtgatctttatttaacgaatgaagattccccatgctgcaccatgcaatggggt 227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2942 cttcgtcgtgatctttatttaacgaatgaagattccccatgctgcaccaggcaatggggt 2883
Query: 228 tatacttatccaacgttaatagctccgcgcataaagcggataagtgtgttttgtcttgca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 tatacttatccaacgttaatagctccgcgcataaagcggataagtgtgttttgtcttgca 2823
Query: 288 aatgccataaaacggttgagaaggtgtccatatcttgaaaccgcgtaggttgtaaagttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 aatgccataaaacggttgagaaggtgtccatatcttgaaaccgcgtaggttgtaaagttc 2763
Query: 348 ttaatttcgtgaagtaagatttagccatttcataattaactaattcaaaatgtagcttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ttaatttcgtgaagtaagatttagccatttcataattaactaattcaaaatgtagcttac 2703
Query: 408 ccaatgtggataaacaccaaggcatagacaccgctatctgtagtggaatgcgattttgca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ccaatgtggataaacaccaaggcatagacaccgctatctgtagtggaatgcgattttgca 2643
Query: 468 tcatgcggatggctttgaatgaatcataccttgacttgcaatattctatatggatgaagt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 tcatgcggatggctttgaatgaatcataccttgacttgcaatattctatatggatgaagt 2583
Query: 528 tggagaaaagttcatccaaatttgagtcaaaagtgctaatgtttggcatctgatatgagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 tggagaaaagttcatccaaatttgagtcaaaagtgctaatgtttggcatctgatatgagt 2523
Query: 588 tgttggtcataatttttttatccatgggagaccttatcaacttggtttgggaatctgttc 647
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2522 tgttggtcataatttttttatccatgggagaccttaacaacttggtttgggaatctgttc 2463
Query: 648 ctgacagtttcgatggtgttgtagttccgagatgtttagtatcgatagaagatgttgttt 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2462 ctgacagtttcgatggtgttgtagttccgagatgtttagtatcgatagaagatg-tgttt 2404
Query: 708 gtagtggttacatttgcacttgaagttgcagtanntgggtgttggtagtaaaccttgggt 767
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||
Sbjct: 2403 gtagtggttacatttgcacttgaagttgcagtagtt-ggtgtt-gtagtaaaccttgtgt 2346
Query: 768 ggttttttaaggaatggaggagaaatggtttccccaaccgttagaagccgat 819
||||||||| ||| |||||||||||| | | |||| ||||||||||||||
Sbjct: 2345 -gttttttaaagaaatgaggagaaatggatacaccaa-cgttagaagccgat 2296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6170
Number of Sequences: 1807
Number of extensions: 6170
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)