BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH07FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1000 1507 0.0
>3x_Contig1000
Length = 4837
Score = 1507 bits (760), Expect = 0.0
Identities = 804/816 (98%), Gaps = 2/816 (0%)
Strand = Plus / Plus
Query: 87 tgttctactacttaataaatgccataattcactttatgggtgcagagaagttatactaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 tgttctactacttaataaatgccataattcactttatgggtgcagagaagttatactaaa 1470
Query: 147 gacggctcttacagtagcaagggataacgtctttgcattagaaagattcaagaacgatat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 gacggctcttacagtagcaagggataacgtctttgcattagaaagattcaagaacgatat 1530
Query: 207 tgcagcattcatgagagataacaatattcaggtcgaaacaaacttcgaagaaatcaacca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 tgcagcattcatgagagataacaatattcaggtcgaaacaaacttcgaagaaatcaacca 1590
Query: 267 atataatattgtgaataatgcattaagaattttggatacagatcagcttgaggaatatca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 atataatattgtgaataatgcattaagaattttggatacagatcagcttgaggaatatca 1650
Query: 327 aatatcaaaaactgttgcttatggaatatatgactctttgaaaacccatttgttgagttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 aatatcaaaaactgttgcttatggaatatatgactctttgaaaacccatttgttgagttt 1710
Query: 387 agacaaaacagagaacattaatttaattaaggttaccagttcagaggtaaactacttggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 agacaaaacagagaacattaatttaattaaggttaccagttcagaggtaaactacttggt 1770
Query: 447 aacatcgggatctcttaataattctgaagtttccataattccgaaaatatcatctacagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 aacatcgggatctcttaataattctgaagtttccataattccgaaaatatcatctacagc 1830
Query: 507 gtacgaaaatgttacaaatattttactgcaactaggatccaagatgagcgcctcttcaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 gtacgaaaatgttacaaatattttactgcaactaggatccaagatgagcgcctcttcaat 1890
Query: 567 acaagaacaaatcattgagtttctttcaatagaatcagatgtcttaaaaaactcaaacga 626
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1891 acaagaacaaatcattgagtttctgtcaatagaatcagatgtcttaaaaaactcaaacga 1950
Query: 627 agctctttggatagcttcaactttattaacagggtataaaaacactgacataagtgattt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 agctctttggatagcttcaactttattaacagggtataaaaacactgacataagtgattt 2010
Query: 687 tcttgcgcatgattcagacccaatctcctgccaatatgacattatagaaatggcaaatga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 tcttgcgcatgattcagacccaatctcctgccaatatgacattatagaaatggcaaatga 2070
Query: 747 gcgggtatcaattttatcgaatcaaacgggactaaacgagttgcagcgcaccaatttgac 806
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2071 gcgggtatcaattttatcgaatcaaacggaactaaacgagttgcagcgcaccaatttgac 2130
Query: 807 tatgaatttgtttgctaatgaaac-aatgatatttctaatgggt-aagatttcaaagatg 864
||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||
Sbjct: 2131 tatgaatttgtttgctatgcaaacaaatgattattctaatgggtaaagatttcaaagatg 2190
Query: 865 aaatggtagattacatttattatgtcattgaatgtt 900
||||| |||||||||| ||| |||||||||||||||
Sbjct: 2191 aaatgttagattacatctataatgtcattgaatgtt 2226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7640
Number of Sequences: 1807
Number of extensions: 7640
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)