BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH07RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1637 0.0
>3x_Contig1776
Length = 26138
Score = 1637 bits (826), Expect = 0.0
Identities = 870/883 (98%), Gaps = 2/883 (0%)
Strand = Plus / Plus
Query: 48 tgaagcgtaaagaggctaagaagcgtaagtcgaccgtcgaatggcgtgaacgtaaacaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13784 tgaagcgtaaagaggctaagaagcgtaagtcgaccgtcgaatggcgtgaacgtaaacaag 13843
Query: 108 tggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagattagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13844 tggtagaaaacactgttgccgaaagacagaagagaagagaggaaaatctacagattagaa 13903
Query: 168 aggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaaattcaagggaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13904 aggacaataaaggtaagaagaagagcaaacaacagaagatgaagagaaaattcaagggaa 13963
Query: 228 ctgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaagaaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13964 ctgcccatttgaagaaaagagcaggatttgaaggacgtatgaaaagtgtcaagaagaaat 14023
Query: 288 gagccttaatcaactaatattctccatccaacaaataaaagcataatatcatatttcatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14024 gagccttaatcaactaatattctccatccaacaaataaaagcataatatcatatttcatc 14083
Query: 348 ctttcaagttatagattaac-cttttacttttac-ttttgcatctctatttttatatact 405
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 14084 ctttcaagttatagattaacgcttttacttttaccttttgcatctctatttttatatact 14143
Query: 406 gacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcataaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14144 gacacccaatgatatataaaaataaatataatcaaacccagaatgtaataatgcataaaa 14203
Query: 466 tctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttatttctt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14204 tctctattaccatgtagtctttaataatggatttcagaagccaatgtgcggttatttctt 14263
Query: 526 ttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagtatag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14264 ttcattcattttaaactgcgttcgaaaaatcatgaaaatggttcagacgcaatagtatag 14323
Query: 586 atgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaaggca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14324 atgaaataaggtatctcgatgagatgaggttgaagaggttcactccagcgaaacaaggca 14383
Query: 646 acgttgcagaagagatagattctatattgcataatgctgaatgtgataacctgtcgaagt 705
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14384 acgttgcagaagagaaagattctatattgcataatgctgaatgtgataacctgtcgaagt 14443
Query: 706 cgattaagtttactcgttacaccaagacaacttcgatatatacgaaccanaaagttatca 765
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 14444 cgattaagtttactcgttacaccaagacaacttcgatatatacgaaccaaaagtttatca 14503
Query: 766 aatactatctccactataaaggaaaatgctgataatgcaatgcatatacaggagaaagca 825
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 14504 aatactatctccactataaagaaaaatgctgataatgcaatgcatatacaggagaagcaa 14563
Query: 826 gacattgctgttntgaaaaaacatgacttcactgaagntgatataaactctggtgtgaat 885
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14564 gacattgctgttttgaaaaaacatgacttcactgaagttgatataaactctggtgtgaat 14623
Query: 886 tcttgggtcttatcatatttagcggtgacaaatccgggcttca 928
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14624 tcttggttcttatcatatttagcggtgacaaatccgggcttca 14666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8847
Number of Sequences: 1807
Number of extensions: 8847
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)