BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH08RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig190 1045 0.0
>3x_Contig190
Length = 941
Score = 1045 bits (527), Expect = 0.0
Identities = 577/592 (97%), Gaps = 2/592 (0%)
Strand = Plus / Plus
Query: 319 cgttcatatccatatacatgttggcaaagccgaactgcgacggtggtaccatgtaagcca 378
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 2 cgttcatatccatatacatgttggcaaagc-gaactgcgacggtggtac-atgtaagcca 59
Query: 379 tgttgcccatgtcttggccaggctcttgtggaggatacatagatcctgaatagtctctgg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tgttgcccatgtcttggccaggctcttgtggaggatacatagatcctgaatagtctctgg 119
Query: 439 cgtccattaagcggggcttctttctcgaaaaaggtctatgatatttttagaatgaacttt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cgtccattaagcggggcttctttctcgaaaaaggtctatgatatttttagaatgaacttt 179
Query: 499 caagctgaaatgcaggtatgatctgtttcttctcatgtggaggttcatctgtataatggt 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 caagctgaaatgcaggtatgatctgtttcttctcatgtggaggttcatctgtataatggt 239
Query: 559 ccgtctatcagcgctacatgatgtaatcaaatatttcaatatggaaatgagttgctgtcc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ccgtctatcagcgctacatgatgtaatcaaatatttcaatatggaaatgagttgctgtcc 299
Query: 619 gttcggaatgatataaaactgagcttgacgaacggcgcactgaagctaccaattacaagc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gttcggaatgatataaaactgagcttgacgaacggcgcactgaagctaccaattacaagc 359
Query: 679 aagatacccattaccaactgctatgtcgtcagtagggcctgattatcttggtcaatgatg 738
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aagagacccataaccaactgctatgtcgtcagtagggcctgattatcttggtcaatgatg 419
Query: 739 tgtaaattcagtgaaatatactcaaccatgttaatttctgngttatttatcttttatcct 798
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 420 tgtaaattcagtgaaatatactcaaccatgttaatttctgtgttatttatcttttatcct 479
Query: 799 ttcattggatcatttgnntttgaaagtccattctttaaaatttaaaatgaactaaaaaga 858
|||||||||||||||| ||||||||||||||||| | | || |||||||||||||||||
Sbjct: 480 ttcattggatcatttggttttgaaagtccattcttaagagttaaaaatgaactaaaaaga 539
Query: 859 taactgacacatttgtttttaaatgggctacgatttttttgatgggtagcat 910
|||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 540 taactgacacatttgtttttaaatggctaacgatatttttgatgggtagcat 591
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6372
Number of Sequences: 1807
Number of extensions: 6372
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)