BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH09FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 864 0.0
>3x_Contig1666
Length = 16162
Score = 864 bits (436), Expect = 0.0
Identities = 580/616 (94%), Gaps = 9/616 (1%)
Strand = Plus / Plus
Query: 197 tttttgacatcggtaagaatcgcaactgcatcgatatctttgctgagggagtggctttca 256
||||||| || ||||||||| | || || || ||||| |||| ||||||||||| ||| |
Sbjct: 89 tttttgaaataggtaagaatagaaaatgaatagatatatttgatgagggagtggatttaa 148
Query: 257 tctagtaacagcaaacacatcaatgcaagatgtacacctgaaaacaccaaatggtcggac 316
| |||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tatagtaaaagaaaaaacataaatgcaagatgtacacctgaaaacaccaaatggtcggac 208
Query: 317 aaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatgc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaaaacttgaacttctcaaaaggacaatttacaatagcagtcaatcctaagtgtgcatgc 268
Query: 377 tccagtataaaaga-cacttgggctggtaatattgatgcaacaactttcttcagtggata 435
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccagtataaaagagcacttgggctggtaatattgatgcaacaactttcttcagtggata 328
Query: 436 agtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaacaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtcaaatttaagtaatctgctatagctgtcttggtggaatttgttgcagaattaaacaa 388
Query: 496 aggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaac 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggcagattgtctggaggatgtgtggttacatagtgtttatgataccacgaatagtgaac 448
Query: 556 caaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaacaa 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caaacagatactatagtgataattaaattccacaaattgggtcacaggttgagtgaacaa 508
Query: 616 at-attccattgttct-accaacctttaagtttagacaacactgtattcaaaggttgttg 673
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ataattccattgttctaaccaacctttaagtttagacaacactgtattcaaaggttgttg 568
Query: 674 gtcagatatgtcaaa-aactccaaacttcg-ataaactta-aaactattcgaatgagttc 730
||||||||||||||| |||||||||||||| ||||||||| ||||||| ||| |||||||
Sbjct: 569 gtcagatatgtcaaagaactccaaacttcgaataaacttataaactatccgagtgagttc 628
Query: 731 aat-tctgccaccattctttcgt-aaaatttctggaaagccggaagtcccaagtgagttt 788
||| ||||||||||||||| ||| |||||| ||||| || | | ||| ||||||||||
Sbjct: 629 aatctctgccaccattcttccgtcaaaattcgtggaatgcggcagttccaaagtgagttt 688
Query: 789 ac-catttctaaactt 803
|| |||||||||||||
Sbjct: 689 acacatttctaaactt 704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6852
Number of Sequences: 1807
Number of extensions: 6852
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)