BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH09RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1155 1231 0.0
>3x_Contig1155
Length = 6106
Score = 1231 bits (621), Expect = 0.0
Identities = 683/700 (97%), Gaps = 3/700 (0%)
Strand = Plus / Plus
Query: 53 gcttccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacat 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcttccaaaactaacttatgatgcaaaccgaattccttgccttggaaggtatgcaaacat 804
Query: 113 tttaggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttaggaatttatcataattgacaaatccgacgacagcttcatagtttgtcgccttaacc 864
Query: 173 atgtatttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 atgtatttctcaattgagccgttggttttttcagcttcttgtgtctcttcaccattttcc 924
Query: 233 tgctgctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tgctgctctattttctctgcctcctgcgtttcttgaacgtcctcaaccttttctgtatcc 984
Query: 293 ctttcttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcatgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 985 ctttcttttgtctctggtgtctttgattctccctttgtactctgctcagaaagctcaggt 1044
Query: 353 ttaacctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ttaacctcttcttttccatcttctttcgtctcttgtgaaaggcccacacttaaaggagct 1104
Query: 413 gagttttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctctt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 gagttttcatcgtcatctttactgggaatttctttaattggttccttggtatcgtctctt 1164
Query: 473 gtcgtttccgtgactcctttagttttgtccgaaccttctgactttttcgatatagtgtct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gtcgtttccgtgactcctttagttttgtccgaaccttctgactttttcgatatagtgtct 1224
Query: 533 ggtttaatctctgaaggcgcttgcgatacgataacttcctcgttctcgcccctgaacagt 592
| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 1225 gttttaatctctgaaggcgcttgcgaaacgataacttcctcgttctcg-ccctgaacaag 1283
Query: 593 ttgaatttcgacatctaactctnctgactcgtagacccccacgttaaattcgaaagatga 652
|||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct: 1284 ttgaatttcgacatctaactctcctgactcgtagaccccaacgtaaaattcgaaagatga 1343
Query: 653 cgtattctccgattattcagggcaatttgatttaatgaagtcttttaacaatgtgccatt 712
||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 1344 cgtattctcgaataattcagggcaatttgatttaatgaagtcttttaacattgt-ccatt 1402
Query: 713 ttaccttcccatacgtttcttggttccgttggttttacaa 752
||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 1403 ttagcttcccatacgtttc-tggttccgttgtttttacaa 1441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7134
Number of Sequences: 1807
Number of extensions: 7134
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)