BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH10FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1189 0.0
>3x_Contig1690
Length = 13018
Score = 1189 bits (600), Expect = 0.0
Identities = 702/732 (95%), Gaps = 3/732 (0%)
Strand = Plus / Minus
Query: 86 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 2975
Query: 146 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 2915
Query: 206 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaatttaagattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2914 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaatttaagattg 2855
Query: 266 aacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2854 aacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaatg 2795
Query: 326 agctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2794 agctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtaga 2735
Query: 386 aagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2734 aagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtgg 2675
Query: 446 gttcttacgaacacaatctattatgtttatctttgaacttatcgttaacccaaccgctat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2674 gttcttacgaacacaatctattatgtttatctttgaacttatcgttaacccaaccgctat 2615
Query: 506 tcacgccaatatttcattttcaagcgcactcattgagtgtgaaatgtctagacatatcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 tcacgccaatatttcattttcaagcgcactcattgagtgtgaaatgtctagacatatcaa 2555
Query: 566 agagatacctagtatcaggatcgaacgatgaaaatataagattctacgatttacaaaaac 625
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2554 agagatacctagtatcaggatcgaacgatgaaaatataagaatctacgatttacaaaaac 2495
Query: 626 gtaaagaattggggacgttgttaggacattaatggttccattacgaatttgagattctca 685
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 2494 gtaaagaattggggacgttgttaggacatcaa-ggttccattacgaatttgagattctca 2436
Query: 686 aaaagttaagattgcgatgggccagatttccaactcaataaaaggcttctttctgcattt 745
| | || ||||| |||||| | ||| |||||||||||||| |||| || ||||||| |
Sbjct: 2435 agaggtaaagatgccgatggccaggatatccaactcaataaatggctactatctgcatct 2376
Query: 746 tgagattcttaaatattattttggaaagtgaaagactggggaaaatttccgaaccttgga 805
||| | ||||| || | |||| ||||||||||| ||||||||||| ||||||| ||
Sbjct: 2375 gaggatcataaaataatagtatggagagtgaaagact-gggaaaatttcggaacctt-ga 2318
Query: 806 aggcccatactg 817
||| ||||||||
Sbjct: 2317 agggccatactg 2306
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,064
Number of Sequences: 1807
Number of extensions: 11064
Number of successful extensions: 1003
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)