BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZH11FM1.SCF screened BAC_end
         (912 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1496                                                        1322   0.0  

>3x_Contig1496 
          Length = 9544

 Score = 1322 bits (667), Expect = 0.0
 Identities = 713/723 (98%), Gaps = 4/723 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgctagtagttcttcatcagataagtttgaattgccgaaataaagagaacctctagcata 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3477 tgctagtagttcttcatcagataagtttgaattgccgaaataaagagaacctctagcata 3418

                                                                        
Query: 146  tgatattaaactctttgcattaaattgagactcgtcaagcggaattgatttgttggcata 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3417 tgatattaaactctttgcattaaattgagactcgtcaagcggaattgatttgttggcata 3358

                                                                        
Query: 206  tatcaacgcacatttcccatcaaaagtaacaaactttataaacttgaaccagataatatc 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3357 tatcaacgcacatttcccatcaaaagtaacaaactttataaacttgaaccagataatatc 3298

                                                                        
Query: 266  ttgaactatttttggaagagcgaaccgcaatagattaataaatatcggtggatatctcat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3297 ttgaactatttttggaagagcgaaccgcaatagattaataaatatcggtggatatctcat 3238

                                                                        
Query: 326  ccatacacatttcttcgtatcatttatgaaggaatcattctcttgtactttaccatatga 385
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3237 ccatacacatttcttcgtatcatttaggaaggaatcattctcttgtactttaccatatga 3178

                                                                        
Query: 386  ttcttctaattcttctgggttatcttctgattgtaccgctgggtgaattctgctataatc 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3177 ttcttctaattcttctgggttatcttctgattgtaccgctgggtgaattctgctataatc 3118

                                                                        
Query: 446  ttcagctgatttctgttcgatataatcgttgcaggagcgaaaggaaacgattggggtctt 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3117 ttcagctgatttctgttcgatataatcgttgcaggagcgaaaggaaacgattggggtctt 3058

                                                                        
Query: 506  gttcaagctagaagagtgagctggaatattcccagacgctagctcaataagggtgataac 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3057 gttcaagctagaagagtgagctggaatattcccagacgctagctcaataagggtgataac 2998

                                                                        
Query: 566  atctagaagccggaacatgctctggaaacagagcatgatagataaagcttcaaaggaaga 625
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2997 atctagaagccggaacatgctctggaaacagagcatgatagaaaaagcttcaaaggaaga 2938

                                                                        
Query: 626  tatctcagaatctacagcctcacttaattcggccacgtcgacaagtcttaattctgaatc 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2937 tatctcagaatctacagcctcacttaattcggccacgtcgacaagtcttaattctgaatc 2878

                                                                        
Query: 686  gaatacgtcacatatcaaaatatccaactgattaatattgttctcgtaggttaatcttaa 745
            ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 2877 gaatacgtcacatatcaaaatatccaacttattaatatt-ttctcgtaggttaatcttaa 2819

                                                                        
Query: 746  gtgggttgtgacaacgctaagcagttttataacgttccaatccacaactatacagtcttt 805
            || | ||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||
Sbjct: 2818 gt-gtttgtgacaacgctaagcag-tttagaacgtcccaatccacaacta-acagtcttt 2762

               
Query: 806  ttt 808
            |||
Sbjct: 2761 ttt 2759


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6697
Number of Sequences: 1807
Number of extensions: 6697
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)