BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH12FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1294 0.0
>3x_Contig1497
Length = 11582
Score = 1294 bits (653), Expect = 0.0
Identities = 751/779 (96%), Gaps = 5/779 (0%)
Strand = Plus / Minus
Query: 85 tgtacgttggcagagctcaaaagaagtacgaacgtgctgaagaattgaagaaacaatacg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10686 tgtacgttggcagagctcaaaagaagtacgaacgtgctgaagaattgaagaaacaatacg 10627
Query: 145 aacaataccgtttggaaaaattggctaagttccaaggtgttaacttgttcatcaagaact 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10626 aacaataccgtttggaaaaattggctaagttccaaggtgttaacttgttcatcaagaact 10567
Query: 205 tggacgattccatttttgacgaaaaattgaaggaagaattcgccccatacggtaccatca 264
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10566 tggacgattccatcgatgacgaaaaattgaaggaagaattcgccccatacggtaccatca 10507
Query: 265 cctctgctagagtcatgatagaccaagagggtaactctaagggtttcggtttcgtttgtt 324
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10506 cctctgctagagtcatgagagaccaagagggtaactctaagggtttcggtttcgtttgtt 10447
Query: 325 tctcttctccagaagaagctaccaaggctatgaccgaaaagaaccaacaaattgttgccg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10446 tctcttctccagaagaagctaccaaggctatgaccgaaaagaaccaacaaattgttgccg 10387
Query: 385 gtaagccattgtacgttgccattgctcaaagaaaggatgtcagaagatcccaattggctc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10386 gtaagccattgtacgttgccattgctcaaagaaaggatgtcagaagatcccaattggctc 10327
Query: 445 aacaaattcaagccagaaaccaaatcagattccaacaacagcaacaacaacaagctgctg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10326 aacaaattcaagccagaaaccaaatcagattccaacaacagcaacaacaacaagctgctg 10267
Query: 505 ccgctgctgctggtatgccaggccaatacatgccacaaatgttctatggtgttatggccc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10266 ccgctgctgctggtatgccaggccaatacatgccacaaatgttctatggtgttatggccc 10207
Query: 565 caagatgtttcccatgtccaatcccatgtatgaacggcccaatgggtgccggtattccaa 624
||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 10206 caagaggtttcccaggtccaaacccaggtatgaacggcccaatgggtgccggtattccaa 10147
Query: 625 agaacggtatggtcccaccaccacaacaatttgctggtagaccatacggtccaatgtacc 684
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10146 agaacggtatggtcccaccaccacaacaatttgctggtagaccaaacggtccaatgtacc 10087
Query: 685 aatgtatgccacctcataatcaattcccaagacaccaacaacaacactacttccaacaac 744
|| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct: 10086 aaggtatgccacctcaaaaccaattcccaagacaccaacaacaacactacatccaacaac 10027
Query: 745 aaaagcaaagacaagcctttgggttgatcatttgtacaagaaagtcagtggccattattg 804
||||||||||||||||||| || ||| || ||||||||||| |||||| |||| ||||
Sbjct: 10026 aaaagcaaagacaagcctt--gggtgaacaattgtacaagaaggtcagt-gccaagattg 9970
Query: 805 acgacgaatacgccgctgggttagatcaccngtatgttctttggatctaccaccacagc 863
|||||||| |||||||| ||| |||||||| ||||| || |||||||||||||||||||
Sbjct: 9969 acgacgaaaacgccgct-ggtaagatcaccggtatgatc-ttggatctaccaccacagc 9913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8808
Number of Sequences: 1807
Number of extensions: 8808
Number of successful extensions: 384
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)