BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZH12RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1493 0.0
>3x_Contig1782
Length = 24703
Score = 1493 bits (753), Expect = 0.0
Identities = 851/880 (96%), Gaps = 3/880 (0%)
Strand = Plus / Plus
Query: 44 gctttaggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttcc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gctttaggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttcc 659
Query: 104 actactttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actactttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatg 719
Query: 164 ccgagcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccgagcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgat 779
Query: 224 gaacaatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaacaatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaa 839
Query: 284 ctctcgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtcca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ctctcgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtcca 899
Query: 344 cagttgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cagttgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatca 959
Query: 404 tttgatggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 tttgatggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaa 1019
Query: 464 aaagtgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 aaagtgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaa 1079
Query: 524 cgagaaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 cgagaaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgta 1139
Query: 584 gatcacgttttccgtacgcttaagagttctttggttgatgagatanaccaggcaagagag 643
|| ||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1140 gaacacgtttccggtacgcttaagagttctttggttgatgagataaaccaggcaagagag 1199
Query: 644 agtgcagcacagtactcaggatttgatatactcaagatcgctattgcagttcttattagt 703
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1200 agtgcagcacagtactcaggatttgatatactcaagaacgctattgcagttcttaatagt 1259
Query: 704 ttggagctggaagagggtatgagcagcgttttcctgatgaaatttg-accatttcttttt 762
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 1260 ttggagctgaaagagggtatgagcagcgttttcctgatggaatttgaaccatttcttctt 1319
Query: 763 gattgcacagaggcatactttaaaaatctacttagtcaattgattgctgagcaagacaga 822
||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1320 gatagcacagaggcatactataaaaatctacatagtcaattgattgctgagcaagacgag 1379
Query: 823 actatgtggaaggactttaacacgtttccttgggcttttggatactgagaacaagatctg 882
|||| ||||||||||||||||||| || |||| ||| ||| |||||||||||||||||||
Sbjct: 1380 actaggtggaaggactttaacacg-ttacttgagctattgaatactgagaacaagatctg 1438
Query: 883 ctgccatatttttggaagatcagaatactttttttaagtt 922
|||| |||| ||| |||||||| ||||| |||| |||||
Sbjct: 1439 ctgcaatatattt-gaagatcaagatactattttaaagtt 1477
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)