BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZA02FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1608                                                         833   0.0  

>3x_Contig1608 
          Length = 13037

 Score =  833 bits (420), Expect = 0.0
 Identities = 524/551 (95%), Gaps = 7/551 (1%)
 Strand = Plus / Plus

                                                                       
Query: 86  cttcttcttcttcatcttcttcttctttccttttatcatcttcatcacttgctattttat 145
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 98  cttcttcttcttcatcttcttcttctttccgtttatcatcttcatcacttgctattttat 157

                                                                       
Query: 146 tctcaactaaagcagaattcct-caaattggtattggcgaactttttgataggacccttc 204
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 158 tctcaactaaagcagaattccttcaaattggtattggcgaactttttgataggacccttc 217

                                                                       
Query: 205 ttgggtacttcgattttgtcgtttgcctctaaatttgactgttggtgctctatcacctct 264
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttgggtacctcgattttgtcgtttgcctctaaatttgactgttggtgctctatcacctct 277

                                                                       
Query: 265 tcc-tcttcttcttcttcctcatcatcataattgatcttgcttgattttgtaacatccac 323
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tccctcttcttcttcttcctcatcatcataattgatcttgcttgattttgtaacatccac 337

                                                                       
Query: 324 gtatggcggttgcgcttgattaaaaccataccagctctgttgatactggtgcggattcgg 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtatggcggttgcgcttgattaaaaccataccagctctgttgatactggtgcggattcgg 397

                                                                       
Query: 384 atagaaaggatggtgggtcccatatctcattcccattggtgcatgctgcatagcggggac 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atagaaaggatggtgggtcccatatctcattcccattggtgcatgctgcatagcggggac 457

                                                                       
Query: 444 accgtattggttgggttgattcatctgaggtatcggataatactgcattcccgtggtttg 503
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 458 accgtattggttgggttgattcatctgaggtatcggataatactgcattcgcgtggtttg 517

                                                                       
Query: 504 taaccgtttgtgccaaa--aatattattcacagattccgcctgtgaagagttattgtacc 561
           ||| ||| |||  ||||  | |||||||||||||| |  |||||||||||||||||||| 
Sbjct: 518 taa-cgtatgttgcaaaagattattattcacagatccgccctgtgaagagttattgtaca 576

                                                                       
Query: 562 ctttttgaccatttatgttgcttcgattctctttcccttgggcccttctttcccatcatt 621
           | ||||||||||| ||||||||   || ||| |||||| ||||| ||| |||||||||| 
Sbjct: 577 cgttttgaccattcatgttgctcgaatactc-ttccctggggcctttc-ttcccatcata 634

                      
Query: 622 ttcattaattg 632
           |||||||||||
Sbjct: 635 ttcattaattg 645


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,250
Number of Sequences: 1807
Number of extensions: 11250
Number of successful extensions: 690
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)