BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA02RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 920 0.0
>3x_Contig1641
Length = 13261
Score = 920 bits (464), Expect = 0.0
Identities = 532/552 (96%), Gaps = 2/552 (0%)
Strand = Plus / Plus
Query: 48 caattggctttggccattatagatgaagtctctgatttggaagctgccggtattaaggtc 107
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 caattggctttggccatcagagatgaagtctctgatttggaagctgccggtattaaggtc 1224
Query: 108 atccaagtcgatgaaccagccgtcagagaaggtttgccattgagagccggtcaagaaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 atccaagtcgatgaaccagccgtcagagaaggtttgccattgagagccggtcaagaaaga 1284
Query: 168 accgaatactacaactggtctgctgaatctttcagagttgctacctctgttgttgccaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 accgaatactacaactggtctgctgaatctttcagagttgctacctctgttgttgccaac 1344
Query: 228 aagactcaaatccactctcacttctgttactccgatttggaccctaaccatatcaaggct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 aagactcaaatccactctcacttctgttactccgatttggaccctaaccatatcaaggct 1404
Query: 288 ttggatgctgatgtcgtttctatcgaattttccaagaaggacgatccaaactacattctg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 ttggatgctgatgtcgtttctatcgaattttccaagaaggacgatccaaactacattctg 1464
Query: 348 caatttgctaactatccaaaccactctggtctaggtttgttcgatatccactctccaaga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 caatttgctaactatccaaaccactctggtctaggtttgttcgatatccactctccaaga 1524
Query: 408 gttccatccaaggaagaattcattcaaaagatggaagaattcttgaagtactacccagct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 gttccatccaaggaagaattcattcaaaagatggaagaattcttgaagtactacccagct 1584
Query: 468 gaaaagttctgggttaacccagactgtggtttgaagacttaaggcggggaagaaaccagg 527
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct: 1585 gaaaagttctgggttaacccagactgtggtttgaagactagaggctgggaagaaaccaag 1644
Query: 528 gcttcctttgacaacaatggtttacgctgttaacaccttccgggaaatctaccctaa-aa 586
||| || ||||| | |||||| |||||| ||| |||||| ||||||||| |||| ||
Sbjct: 1645 gctacc-ttgaccaacatggttaacgctgctaagcacttccgtgaaatctacgctaagaa 1703
Query: 587 ataaatggactc 598
|||||| |||||
Sbjct: 1704 ataaatagactc 1715
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,793
Number of Sequences: 1807
Number of extensions: 22793
Number of successful extensions: 318
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)