BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA03FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1478 1524 0.0
>3x_Contig1478
Length = 9651
Score = 1524 bits (769), Expect = 0.0
Identities = 800/808 (99%), Gaps = 2/808 (0%)
Strand = Plus / Minus
Query: 86 tcaaaaaggaacttatcgagcaatcatatcctgaaattctccgtagtaatctttcttcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 tcaaaaaggaacttatcgagcaatcatatcctgaaattctccgtagtaatctttcttcga 5605
Query: 146 cagtcttagaactaaagaaactaggcattgacgatttggtgcatttcgatttcatggacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 cagtcttagaactaaagaaactaggcattgacgatttggtgcatttcgatttcatggacc 5545
Query: 206 ctcctgccccataaactatgatgagagccttagaagaattaaactttttggcatgtttag 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 ctcctgccccagaaactatgatgagagccttagaagaattaaactttttggcatgtttag 5485
Query: 266 atgacgatggtaatttaacacctttgggtagattggcttctcaattccctcttgatccaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 atgacgatggtaatttaacacctttgggtagattggcttctcaattccctcttgatccaa 5425
Query: 326 tgcttgcggtaatgttgattggatcccccgaattttcttgttccgaagagatgctaacga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 tgcttgcggtaatgttgattggatcccccgaattttcttgttccgaagagatgctaacga 5365
Query: 386 ttgtcgccatgttatccgtacctagtgttttcattcgtccttcgaaagataagaaaagat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 ttgtcgccatgttatccgtacctagtgttttcattcgtccttcgaaagataagaaaagat 5305
Query: 446 cagatgacgcaaagaacatatttgcacatcctgatggcgaccacctaacattattgaatg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cagatgacgcaaagaacatatttgcacatcctgatggcgaccacctaacattattgaatg 5245
Query: 506 tctaccatgcattcaagtcagacgaagcttatgagtacgggatcaacaagtggtgccgcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 tctaccatgcattcaagtcagacgaagcttatgagtacgggatcaacaagtggtgccgcg 5185
Query: 566 acaactttttaaattatagatctctatctgctgctgacaacatccgcaaccaattggaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 acaactttttaaattatagatctctatctgctgctgacaacatccgcaaccaattggaaa 5125
Query: 626 ggttgatggttcgttacaatctcgagttgaacactacagattatgactcccctagatatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ggttgatggttcgttacaatctcgagttgaacactacagattatgactcccctagatatt 5065
Query: 686 tcgataacattagaaaagcgttagctgcaggcttctttatgcaggtcgc-aaataacgat 744
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 5064 tcgataacattagaaaagcgttagctgcaggcttctttatgcaggtcgcaaaaaaacgat 5005
Query: 745 ctggcggaaaa-gttatatcacagtcaaagataaccaagatgttttgatacatccttcaa 803
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 ctggcggaaaaggttatatcacagtcaaagataaccaagatgttttgatacatccttcaa 4945
Query: 804 ctgttttgggccatgatgccgaatgggttgtatacaatgaattcgttctaacctnccaaa 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4944 ctgttttgggccatgatgccgaatgggttgtatacaatgaattcgttctaacctccaaaa 4885
Query: 864 actacattagaactggtacatcagttag 891
||||||||||||||| |||||||||||
Sbjct: 4884 actacattagaactgtaacatcagttag 4857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5485
Number of Sequences: 1807
Number of extensions: 5485
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)