BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA03RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1338 0.0
>3x_Contig1536
Length = 11572
Score = 1338 bits (675), Expect = 0.0
Identities = 807/835 (96%), Gaps = 14/835 (1%)
Strand = Plus / Minus
Query: 53 aaggaaaaat-aattggcggcagatttataccccatagatcacatctacttttcaactct 111
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 aaggaaaaatcaattggcggcagatttataccccatagatcacatctacttttcaactct 7862
Query: 112 ttgagctgcaattccgccatgtcacttgcagaatccattatttcgcaaccaaagcttaat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7861 ttgagctgcaattccgccatgtcacttgcagaatccattatttcgcaaccaaagcttaat 7802
Query: 172 ttacaaccgaactcaagagacgcctgtataacgcaatttcctacaccagaaccaagatcc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7801 ttacaaccgaactcaagagacgcctgtataacgcaatttcctacaccagaaccaagatcc 7742
Query: 232 ataaatatgctattggaattcagtccgcattttttaaagacaatagtgaggaaatcaggc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7741 ataaatatgctattggaattcagtccgcattttttaaagacaatagtgaggaaatcaggc 7682
Query: 292 atcaattcaccatatacaaagttactgaaacttgtgtacttcttcaatttccttgcatgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 atcaattcaccatatacaaagttactgaaacttgtgtacttcttcaatttccttgcatgt 7622
Query: 352 ggataaatggctcttgtataacatgtatgcaaaaggaaatgaacgaaagagacaggaaca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 ggataaatggctcttgtataacatgtatgcaaaaggaaatgaacgaaagagacaggaaca 7562
Query: 412 tcgggatttgatgataaattcttaacaataagatcccgcggaatagttgaaattaagtca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 tcgggatttgatgataaattcttaacaataagatcccgcggaatagttgaaattaagtca 7502
Query: 472 ttatatttaagtacaattttttcgaaagactgatcatctgatctttcgaaagcgtcgttc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7501 ttatatttaagtacaattttttcgaaagactgatcatctgatctttcgaaagcgtcgttc 7442
Query: 532 aatgatcgtactaactcttgtccctttgttttatatgtattcggaaagtacagaagaaca 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7441 aatgatcgtactaactcttgtccctttgttttatatgtattcggaaagtacagaagaaca 7382
Query: 592 gcagattctatactttgcccaatttctggtagtggattatagccgaatttttgtactttt 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7381 gcagattctatactttgcccaatttctggtagtggattatagccgaatttttgtactttt 7322
Query: 652 gaacatattaagtattcttcttccactccagaatagaagatatatttcatttccttttaa 711
||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||
Sbjct: 7321 gaacatattaagtattcttcttccactccaggaaagaggatatatttca-ttccttttaa 7263
Query: 712 agctgtaaccctnctcgtcgtcaacaaacattttagnaaaagggtaagtttattagtaaa 771
||||| ||| ||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 7262 gcttgtaa-cctcctcgtcgtcaacaaacattttagaaga--ggtaagtttattagtaaa 7206
Query: 772 actgggaaggggtcgcatttaagggtcgtgttgaaaaaaagatggtcctaggatttacat 831
||| ||||||| ||||| || |||||||||||| |||||||||||| |||||||||||||
Sbjct: 7205 act-ggaagggttcgcaatt-agggtcgtgttg-aaaaaagatggt-ctaggatttacat 7150
Query: 832 tnctccttcatatttcgaaagggaacagnanagtcagcatgactggctatgtttc 886
| ||||| ||| ||||||| ||||||| | ||||||||||||| ||||||||||
Sbjct: 7149 t-ctcctcaata-ttcgaaa-ggaacag-agagtcagcatgact-gctatgtttc 7100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6893
Number of Sequences: 1807
Number of extensions: 6893
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)