BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA05RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig187 952 0.0
>3x_Contig187
Length = 1332
Score = 952 bits (480), Expect = 0.0
Identities = 503/511 (98%)
Strand = Plus / Plus
Query: 55 ataaatgacccatcaacacctttatccgccccgactaatagaatattggagcgagtattc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ataaatgacccatcaacacctttatccgccccgactaatagaatattggagcgagtattc 655
Query: 115 ttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagatcatttgt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagatcatttgt 715
Query: 175 gataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaatcgttcg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaatcgttcg 775
Query: 235 gatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttccactcttcg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttccactcttcg 835
Query: 295 actgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggcaaaagag 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 actgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggcaaaagag 895
Query: 355 agcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggattagtaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 agcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggattagtaca 955
Query: 415 gacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaattttcaagt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaattttcaagt 1015
Query: 475 acgtaccgaaatactgtcaaaaactcattcacttcaacatcatanaaccaatgctttttg 534
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1016 acgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaaccaattctttttt 1075
Query: 535 attcgcacccattctaaaagctcgaatatct 565
|| | |||||||||||| | ||| |||||||
Sbjct: 1076 atactcacccattctaatatctctaatatct 1106
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,188
Number of Sequences: 1807
Number of extensions: 18188
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)