BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA06FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1017 0.0
3x_Contig748 222 1e-57
>3x_Contig1281
Length = 7825
Score = 1017 bits (513), Expect = 0.0
Identities = 513/513 (100%)
Strand = Plus / Plus
Query: 87 tcctttgctttgattggggatggagaagcgtcttttctttcgtcagggcctcttaattct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7309 tcctttgctttgattggggatggagaagcgtcttttctttcgtcagggcctcttaattct 7368
Query: 147 agtaataaattccttgctctatctgcagggtcttgttttgatgacgacaagctttcagtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7369 agtaataaattccttgctctatctgcagggtcttgttttgatgacgacaagctttcagtt 7428
Query: 207 tcaggaaggctggccgattttttagcagtaggcgattcggtaagcgttctattttgttcc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7429 tcaggaaggctggccgattttttagcagtaggcgattcggtaagcgttctattttgttcc 7488
Query: 267 acgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgccccggattta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7489 acgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgccccggattta 7548
Query: 327 ccatctagtaatttctttctagccaatgcacgtttacgagtactagatggatctcctttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7549 ccatctagtaatttctttctagccaatgcacgtttacgagtactagatggatctcctttt 7608
Query: 387 gaaggagctgcatttttcaatttatccaaaagcttctctatatcgtccctatcatcagac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7609 gaaggagctgcatttttcaatttatccaaaagcttctctatatcgtccctatcatcagac 7668
Query: 447 ggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcctgttgtttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7669 ggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcctgttgtttc 7728
Query: 507 cgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttcttcttccagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7729 cgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttcttcttccagt 7788
Query: 567 ttgacattatgagttttagctttcttgaattcg 599
|||||||||||||||||||||||||||||||||
Sbjct: 7789 ttgacattatgagttttagctttcttgaattcg 7821
>3x_Contig748
Length = 2621
Score = 222 bits (112), Expect = 1e-57
Identities = 193/211 (91%), Gaps = 7/211 (3%)
Strand = Plus / Minus
Query: 679 gattttcaaattcccagcaaactta-tttgatttcatcgcttagaagatcagctttcttt 737
|||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2621 gattttgaaattcc-agcaaacttaatttgatttcatcgcttagaagatcagctttcttt 2563
Query: 738 tctagcttcaggtaaaaccggtactaccttattttaaacacgatctaacgaatggaattt 797
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct: 2562 -ctagcttcaggtaaaaccggtactaccttatttaaaacacgatctaacggatggaa-tt 2505
Query: 798 tanaagggtcacttaagttttccaattttcatagaaacgcttaacgttaattactgactg 857
|| ||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||
Sbjct: 2504 tagaagggtcactt-aggtttccaatttcaatag-aacgctcaacgttaattactgactg 2447
Query: 858 ggaaaaattccttacattcaattaccaactg 888
| ||||||||||||| ||| ||||||||||
Sbjct: 2446 tg-aaaattccttacaatcagttaccaactg 2417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8108
Number of Sequences: 1807
Number of extensions: 8108
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)