BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA06RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1452 1511 0.0
>3x_Contig1452
Length = 10057
Score = 1511 bits (762), Expect = 0.0
Identities = 817/834 (97%), Gaps = 1/834 (0%)
Strand = Plus / Minus
Query: 53 gtcagtctcttcaaaatcttaggtgctaccgttaagggtgctactgtagctcaagctgaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 gtcagtctcttcaaaatcttaggtgctaccgttaagggtgctactgtagctcaagctgaa 5485
Query: 113 gcctttggcattccaaagtcttctgcctcaacgtataaaatagcaactttgaaggtacca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 gcctttggcattccaaagtcttctgcctcaacgtataaaatagcaactttgaaggtacca 5425
Query: 173 ttcaagctaccagaaatgattagaagaggtaaagggccaagaaggtagcttatccctatg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 ttcaagctaccagaaatgattagaagaggtaaagggccaagaaggtagcttatccctatg 5365
Query: 233 atttaagtagaacatgcgtttgtataatacttttttgcaattgatctacacttcttcaga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 atttaagtagaacatgcgtttgtataatacttttttgcaattgatctacacttcttcaga 5305
Query: 293 aatctattttactatataaagaaaaagaattattcatctcgtattatcaaccttcatctt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 aatctattttactatataaagaaaaagaattattcatctcgtattatcaaccttcatctt 5245
Query: 353 ataatgatcaactaaaagaatacagaaagtgatggtataatcgagaaattagaacttaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 ataatgatcaactaaaagaatacagaaagtgatggtataatcgagaaattagaacttaaa 5185
Query: 413 catcatatatagaacctgtggatatgcaagatgttgggataggtgtcgatctgggatcta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 catcatatatagaacctgtggatatgcaagatgttgggataggtgtcgatctgggatcta 5125
Query: 473 ccgagtttagaataggtatttttgattattatactgatagcctagtcaaggaaacgaaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ccgagtttagaataggtatttttgattattatactgatagcctagtcaaggaaacgaaag 5065
Query: 533 ataaagtcccttattttatgcatggaaatgggatcattacccaatgtacctctgatattt 592
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aaaaagtcccttattttaggcatggaaatgggatcattacccaatgtacctctgatattt 5005
Query: 593 taactgctgtagaaaaagcattcaatactttatatatccaggagtacaacatttgttcat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 taactgctgtagaaaaagcattcaatactttatatatccaggagtacaacatttgttcat 4945
Query: 653 tgggtgtaagagcaacttgttcgatggtggtttgggaacaggaagatgagaacttaattt 712
|||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct: 4944 tgggtgtaggagcaacttgttcgatggtggttgggaaacagaaagatgagaacttaattc 4885
Query: 713 ccttcattttgattcatgacaagaacggtagatatcacgatatcattttttggatgcatt 772
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 ccttcaatttgattcatgacaagaacggtagatatcacgatatcattttttggatgcatt 4825
Query: 773 cagcagctatagaggagacggaatttttcaacattattacagacaaatcaatcttatgcc 832
|||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||| |
Sbjct: 4824 cagcagctatagaggagacggaatatctcaacaatattacagacgaatcaatcttatg-c 4766
Query: 833 cactccggcgggaaattttttcctgaaatggcatccccgaaattgttgcacttg 886
|||| ||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 4765 cacttcggcgggaaatttttccctgaaatggcaatcccgaaattgttgcacttg 4712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7922
Number of Sequences: 1807
Number of extensions: 7922
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)