BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZA08FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1127 1154 0.0
>3x_Contig1127
Length = 4949
Score = 1154 bits (582), Expect = 0.0
Identities = 638/650 (98%), Gaps = 5/650 (0%)
Strand = Plus / Minus
Query: 86 cttatgtttgtagtgtttatctggtaattcttccggggtataaaccttgtcatgaataat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 cttatgtttgtagtgtttatctggtaattcttccggggtataaaccttgtcatgaataat 3090
Query: 146 tctgtccgttctactggagggatccactaggtacgacattcctggcagcggtgccgatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 tctgtccgttctactggagggatccactaggtacgacattcctggcagcggtgccgatat 3030
Query: 206 tgtacttgcagcagcttgcaatgtatttgccttttttggaggtttgaaagtagttggaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 tgtacttgcagcagcttgcaatgtatttgccttttttggaggtttgaaagtagttggaga 2970
Query: 266 gtcagaattattgttcgaatcactactggcagattctaccgaactggtagtttgagtccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 gtcagaattattgttcgaatcactactggcagattctaccgaactggtagtttgagtccg 2910
Query: 326 cacatacggtttatatttttcctttttaatgagtgactggggcagcaaccattggagaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2909 cacatacggtttatatttttcctttttaatgagtgactggggcagcaaccattggagaat 2850
Query: 386 agacttattgtccgaagagctctctggaatttcccccaaagatgaccctttctgttcttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2849 agacttattgtccgaagagctctctggaatttcccccaaagatgaccctttctgttcttc 2790
Query: 446 aactccctcctcagattgggcattgttttcgctcctcacctgttgcacatcacttaaacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2789 aactccctcctcagattgggcattgttttcgctcctcacctgttgcacatcacttaaacc 2730
Query: 506 tctccaatcaagatatagtaaagcagccgtgcttagaggcactataccatcaaatgcgac 565
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2729 tctccaatcaagatatagtaaagcagccgtccttagaggcactataccatcaaatgcgac 2670
Query: 566 attagcatacacggttctacactggaatcgttggaaaaacttct-acgccggatgtttaa 624
||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 2669 attagcatacacggttctacacttgaatcgttgg-aaaacttctaacgccggatgtttag 2611
Query: 625 gtaaaagctctaatatgggtttagatttgattctatcattgtgatccatcattatttaca 684
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2610 gtaaaagctctaatatgggtttagatttgattctatca-tgtgatccatcattatttaca 2552
Query: 685 atcccttttgatgggcagaaaaaagctgggcttcaattgggagatccctt 734
|| ||||||||| ||||||||| ||||| ||||||| || ||||||||||
Sbjct: 2551 ataccttttgat-ggcagaaaatagctgcgcttcaa-tgtgagatccctt 2504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6692
Number of Sequences: 1807
Number of extensions: 6692
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)