BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZA08RM1.SCF screened BAC_end
         (984 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1380                                                        1168   0.0  

>3x_Contig1380 
          Length = 6718

 Score = 1168 bits (589), Expect = 0.0
 Identities = 614/621 (98%), Gaps = 1/621 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   cgcaagtcctcgatctcaaagaaaatcggcagaaattgctgatttatgcgaacagacagc 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 cgcaagtcctcgatctcaaagaaaatcggcagaaattgctgatttatgcgaacagacagc 5243

                                                                        
Query: 108  agaagaactcaagggcttaatacttgagctaacttcaaacaataaaaaggaaccgggaac 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 agaagaactcaagggcttaatacttgagctaacttcaaacaataaaaaggaaccgggaac 5303

                                                                        
Query: 168  tatatctaagtcaaaatccttgccaccactcccacgacctttgctcaatggacaaaagaa 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 tatatctaagtcaaaatccttgccaccactcccacgacctttgctcaatggacaaaagaa 5363

                                                                        
Query: 228  tgcactgcgccataataaaatgtctcctgaaaagcagagaagatatatggagagaataca 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 tgcactgcgccataataaaatgtctcctgaaaagcagagaagatatatggagagaataca 5423

                                                                        
Query: 288  ggggatacaacactaacacaataacatatatattattctagttagttaatatccggctat 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 ggggatacaacactaacacaataacatatatattattctagttagttaatatccggctat 5483

                                                                        
Query: 348  gagatggtacggtatgtaatattacagattgtctttttaaatgtcctgtttataatatct 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 gagatggtacggtatgtaatattacagattgtctttttaaatgtcctgtttataatatct 5543

                                                                        
Query: 408  tgggagatgcgtctgatgaggtcgtagattcctgaattgggctgagggaagaattctgtg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 tgggagatgcgtctgatgaggtcgtagattcctgaattgggctgagggaagaattctgtg 5603

                                                                        
Query: 468  taaagcttggagaaggcttcgtgaatgagctgttgggggtaacaggtgaagcaagagttt 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 taaagcttggagaaggcttcgtgaatgagctgttgggggtaacaggtgaagcaagagttt 5663

                                                                        
Query: 528  tgttatcgagtattcggtcctcgcaattatcttcagactttcggggttcatggagtaatg 587
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 5664 tgttatcgagtattcggtcctcgcaattatcttcagactttcgggaatcatggagtaatg 5723

                                                                        
Query: 588  atgaactgaaaggttcaaaatttgacctatgaattgaattatgatccaaaaatgggactg 647
            ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 5724 atgaactgaaaggttcagaatatgacctatgaattgaattatgatcaaaaaatgtgactg 5783

                                 
Query: 648  tntttattttttatttccaac 668
            | |||||||||||||||||||
Sbjct: 5784 t-tttattttttatttccaac 5803


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,839
Number of Sequences: 1807
Number of extensions: 14839
Number of successful extensions: 168
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)