BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB01FM1.SCF screened BAC_end
(875 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 900 0.0
>3x_Contig1716
Length = 19108
Score = 900 bits (454), Expect = 0.0
Identities = 504/519 (97%), Gaps = 2/519 (0%)
Strand = Plus / Plus
Query: 349 aaagaaaagaaagaaattgaaaatgactaagggaaggaaggctgataacccttctcaaat 408
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62 aaagaaaagaaagaaagggaaaatgactaagggaaggaaggctgataacccgtctcaaag 121
Query: 409 caattttgataagaaggttataaactctgatggattcacgaacgaatcgttgaatagcta 468
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 caattttgataagaagggtataaactctgatggattcacgaacgaatcgttgaatagcta 181
Query: 469 atactatggaatacactccaacctaacaacagattttctcaactttgctcagtttctccc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atactatggaatacactccaacctaacaacagattttctcaactttgctcagtttctccc 241
Query: 529 ctccagtgggcgatgagcaactcgctattcctgaacaaaataatccgttgtaattatatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctccagtgggcgatgagcaactcgctattcctgaacaaaataatccgttgtaattatatg 301
Query: 589 caagcaagcaattataatcacaaaactagaatggatcatcagacgaaaagtangttgaaa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 302 caagcaagcaattataatcacaaaactagaatggatcatcagacgaaaagtaggttgaaa 361
Query: 649 agggactgtgagttatgtaaacgcaagattccaaacacaaggaacaactatatatatata 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggactgtgagttatgtaaacgcaagattccaaacacaaggaacaactatatatatata 421
Query: 709 tatcacttcatatcttgcttttagtttatactgacanatccatacagaatttcaaggtcg 768
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 422 tatcacttcatatcttgcttttagtttatactgacaaatccatacagaatttcaaggtcg 481
Query: 769 tatgaaataatgcctgttattaacccgatggtaatacgacaggacctanggtaattttct 828
|||||||||||||||| |||||| |||||| ||||||||| |||||| ||||||||||
Sbjct: 482 tatgaaataatgcctggtattaa-ccgatgtaaatacgaca-gacctagtgtaattttct 539
Query: 829 atcattcttgggtacagttgataagttttttatgtggtg 867
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 540 atcattcttgtgtacagttgataagttttttatgtggtg 578
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9823
Number of Sequences: 1807
Number of extensions: 9823
Number of successful extensions: 1016
Number of sequences better than 1.0e-20: 1
length of query: 875
length of database: 10,358,551
effective HSP length: 16
effective length of query: 859
effective length of database: 10,329,639
effective search space: 8873159901
effective search space used: 8873159901
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)