BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB01RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig850 797 0.0
3x_Contig376 280 5e-75
>3x_Contig850
Length = 2234
Score = 797 bits (402), Expect = 0.0
Identities = 430/436 (98%), Gaps = 5/436 (1%)
Strand = Plus / Minus
Query: 47 ccttaattctgttctgacgagtttctgccaaatatttttggagaagacaaaagaaatcac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ccttaattctgttctgacgagtttctgccaaatatttttggagaagacaaaagaaatcac 573
Query: 107 gtgactaaatttaccgtctaatgttcagtcctccaccgctagcccagtaagccagagaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtgactaaatttaccgtctaatgttcagtcctccaccgctagcccagtaagccagagaat 513
Query: 167 ggaatgtgatgaattggtaccccaaatgtaacttcggtttaacggtctttgcaagaagca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaatgtgatgaattggtaccccaaatgtaacttcggtttaacggtctttgcaagaagca 453
Query: 227 cataatttattatagttacccgaatgctcttcactcttcaattgttccccattgagggag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cataatttattatagttacccgaatgctcttcactcttcaattgttccccattgagggag 393
Query: 287 aaaagttgaattagagactgggaaaaaaaaactggccatcaaaaacagtattttgacttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaaagttgaattagagactgggaaaaaaaaactggccatcaaaaacagtattttgacttt 333
Query: 347 caatgagatttattatcttatgatggattcagcttttgattcatttctggtactgttttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caatgagatttattatcttatgatggattcagcttttgattcatttctggtactgttttt 273
Query: 407 ctgtcatttgaattgatctgatcaataat---ttcggtttggaaatagtatt-cagacta 462
||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct: 272 ctgtcatttgaattgatctgatcaataatatctacggtttggaaatagtattacagacta 213
Query: 463 atactg-tgtactttt 477
|||||| |||||||||
Sbjct: 212 atactgctgtactttt 197
>3x_Contig376
Length = 1802
Score = 280 bits (141), Expect = 5e-75
Identities = 179/191 (93%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 682 aaaccaacctgcctcttttggccaattctacacaacgtatgttacaagagaaattgggtc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aaaccaacctgcctcttttggccaattctacacaacgtatgttacaagagaaattgggtc 63
Query: 742 aagtcactgacatttctcatttgcctgatgaatacgttcaattgggacacagagtggaaa 801
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 64 aagtcactgacatttctcaattgcctgatgaatacgttcaattggaacacagagtggaaa 123
Query: 802 ctatcaagttnattctttgagaatttcttngaagttcccaagatcttaccaaatgaaagt 861
|||||||||| | ||| |||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 124 ctatcaagttaa-tctatgagaatttcttgaaagttaccaagatctacgaaaatgaaagt 182
Query: 862 tacgattaccc 872
|||||||||||
Sbjct: 183 tacgattaccc 193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8273
Number of Sequences: 1807
Number of extensions: 8273
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)