BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1572 0.0
3x_Contig40 190 3e-48
>3x_Contig1635
Length = 12349
Score = 1572 bits (793), Expect = 0.0
Identities = 832/840 (99%), Gaps = 4/840 (0%)
Strand = Plus / Plus
Query: 87 tgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactcatggt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactcatggt 1823
Query: 147 tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 tcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaatgacc 1883
Query: 207 tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 tggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgatgctc 1943
Query: 267 aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 aaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagttagaa 2003
Query: 327 gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 gttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagccgcag 2063
Query: 387 aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 aattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgatatcg 2123
Query: 447 aattcactgataatggtgttctagtgctcggctcatgtgtctacagaataggttcaagtg 506
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2124 aattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttcaagtg 2183
Query: 507 tggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaagaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaagaaaa 2243
Query: 567 ctattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgacagat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 ctattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgacagat 2303
Query: 627 tgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaattctg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 tgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaattctg 2363
Query: 687 aaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaacttcttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 aaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaacttcttc 2423
Query: 747 acaatggtgctcacatattagggtacctctcctgaagacattgacaaggctgaaaacaga 806
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 acaatggtgctcacatatt-gggtacctctcctgaagacattgacaaggctgaaaacaga 2482
Query: 807 cacaagttctcaactattcttnattctatcggcgtcaatcaaccagaatgggattgagtt 866
|||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 2483 cacaagttctcaactattctggattctatcggcgtcaatcaaccagaat-ggagtgagtt 2541
Query: 867 ggtcttctgttgaagaagctaaagtattcgctaatcaagtggggatacccggttttaatt 926
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2542 -gtcttctgttgaagaagctaaagtattcgctaatcaagt-gggatacccggttttaatt 2599
>3x_Contig40
Length = 946
Score = 190 bits (96), Expect = 3e-48
Identities = 282/344 (81%)
Strand = Plus / Minus
Query: 117 tccatgaattaaccaaaattgactcatggttcctattcaagtgtatgaacatagtcgaca 176
||||| |||||||||||||| |||||| ||||||||||| | ||| |||||| || |||
Sbjct: 431 tccattaattaaccaaaatttactcatttttcctattcaattttattaacatattctaca 372
Query: 177 tgtataaagatttggaacaggttaatgacctggaatctttggacaaagaactgctacttg 236
| |||||| |||| |||| ||||| |||| ||||||| ||||| |||| ||||||
Sbjct: 371 tttataaatatttttaacattttaattacctttaatctttttacaaataacttctacttt 312
Query: 237 aagcgaagaaactaggtttctctgatgctcaaatcgcactatgtttgaacaagggtagtg 296
|| | || |||||| ||||||| || |||||||| |||||| ||| ||||| || |
Sbjct: 311 aatctaataaactatttttctcttattctcaaatctcactattttttaacaattttattt 252
Query: 297 actcaagaacctcagaattagaagttagaagttacagaaaatcctttggaatcgttccgt 356
|||||| ||||||| ||||| || ||| || ||||| |||||||||| |||| |||| |
Sbjct: 251 actcaataacctcataattataatttataatttacataaaatcctttttaatctttcctt 192
Query: 357 ttgtcaaacgaattgacaccctagccgcagaattccctgctcaaacaaactatttataca 416
|| |||||| |||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 191 ttttcaaactaatttacaccctatcctcataattcccttctcaaacaaactatttataca 132
Query: 417 ctacttacaatgctactaagagtgatatcgaattcactgataat 460
||||||||||| ||||||| | | ||||| |||||||| |||||
Sbjct: 131 ctacttacaattctactaatatttatatctaattcacttataat 88
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6052
Number of Sequences: 1807
Number of extensions: 6052
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)