BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB02RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1558 0.0
>3x_Contig1779
Length = 24855
Score = 1558 bits (786), Expect = 0.0
Identities = 855/872 (98%), Gaps = 5/872 (0%)
Strand = Plus / Plus
Query: 43 gcttacgaggaaacaaatgaatttatgatcaaagtcgaatttaatgaacaattatctatc 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13744 gcttacgaggaaacaaatgaattcatgatcaaagtcgaatttaatgaacaattatctatc 13803
Query: 103 attagaactcatcttgatgaattaaaagatgctataagaacaatacacttagacactgct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13804 attagaactcatcttgatgaattaaaagatgctataagaacaatacacttagacactgct 13863
Query: 163 gatgatttgggcttcgatccagaaaagaaattgaaactagaaaaccaccatttatttgga 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13864 gatgatttgggcttcgatccagaaaagaaattgaaactagaaaaccaccatttacatgga 13923
Query: 223 tggtgtatgcgattaacacgtaatgatgcaaaggccctacgtcaacataagaaatacatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13924 tggtgtatgcgattaacacgtaatgatgcaaaggccctacgtcaacataagaaatacatt 13983
Query: 283 gagttgtccactgtaaaggctggtatattcttttcaacaaaagaactaaaaaatattgcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13984 gagttgtccactgtaaaggctggtatattcttttcaacaaaagaactaaaaaatattgcc 14043
Query: 343 gaagagacctcagaactacaaaaaaaatatgaacaacagcaagcatcgttagtcaaagaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14044 gaagagacctcagaactacaaaaaaaatatgaacaacagcaagcatcgttagtcaaagaa 14103
Query: 403 attgtttcgattactctaagctatacaccggttttagagaagctttctgttgtaactgct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14104 attgtttcgattactctaagctatacaccggttttagagaagctttctgttgtaactgct 14163
Query: 463 caactagacattctttgttcattcgcgcaagtatcttcatatgcgccaattccctatgtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14164 caactagacattctttgttcattcgcgcaagtatcttcatatgcgccaattccctatgtt 14223
Query: 523 cgtccgaagatgtatccattgaacgatcaaaacagaacaacagaacttatagcatctcgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14224 cgtccgaagatgtatccattgaacgatcaaaacagaacaacagaacttatagcatctcgc 14283
Query: 583 catcccattgtagagatgcaagacgatgttaccttcatttcaaatgatgtaaaattagta 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14284 catcccattgtagagatgcaagacgatgttaccttcatttcaaatgatgtaaaattagta 14343
Query: 643 cagggtgattctgaattcatagtcattactggtcctaatatgggtggtaaatccacttac 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14344 cagggtgattctgaattcatagtcattactggtcctaatatgggtggtaaatccacttac 14403
Query: 703 atcangcagattggtgtaatatgtctaatggctcanattgggatgc-ttgttccatgcga 761
|||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct: 14404 atcaggcagattggtgtaatatgtctaatggctcaaatt-ggatgctttgttccatgcg- 14461
Query: 762 acgaggcaaaaa-tgctgctgttgatgccatactatgccgtgttggagctgttgattctc 820
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 14462 acgaggcaaaaattgctgctgttgatgccatactatgccgtgttggagctggtgattctc 14521
Query: 821 attggaagggtgtctccaccttc-tgatggaaaagttagaaacagcgtcaatattgaaaa 879
| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct: 14522 aattgaagggtgtctccaccttcatgatggaaatgttagaaacagcgtcaatattgaaga 14581
Query: 880 atgccattcacacctcactagttatcgttgat 911
|||||| ||||| |||||||||||||||||||
Sbjct: 14582 atgccactcacaactcactagttatcgttgat 14613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8385
Number of Sequences: 1807
Number of extensions: 8385
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)