BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB03FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1404 0.0
>3x_Contig1762
Length = 22098
Score = 1404 bits (708), Expect = 0.0
Identities = 798/819 (97%), Gaps = 7/819 (0%)
Strand = Plus / Plus
Query: 86 ctgattcctatgatgagcttgtcaattcaaatttcttactaaggtcagaagaatttcttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18385 ctgattcctatgatgagcttgtcaattcaaatttcttactaaggtcagaagaatttcttt 18444
Query: 146 tggaaatacacggtagggtaatacttaaaggatgcatagaaatacacacacatttatata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18445 tggaaatacacggtagggtaatacttaaaggatgcatagaaatacacacacatttatata 18504
Query: 206 gacacgaatgaacgtatgtatgtatgtagtacgagatttccaggttacgaccttcctacc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18505 gacacgaatgaacgtatgtatgtatgtagtacgagatttccaggttacgaccttcctacc 18564
Query: 266 caaaattggccattggcccccatatctacgtttttccttatttgacgggataatattaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18565 caaaattggccattggcccccatatctacgtttttccttatttgacgggataatattaca 18624
Query: 326 cctgtatcgtaacgttgtttgtttttcttgtcgaggtattcttgcaatttttcgatggca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18625 cctgtatcgtaacgttgtttgtttttcttgtcgaggtattcttgcaatttttcgatggca 18684
Query: 386 gtgatcagtttgcgtctgtcttcgagcgttaaggtactttcgtttttaaatttgtggagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18685 gtgatcagtttgcgtctgtcttcgagcgttaaggtactttcgtttttaaatttgtggagg 18744
Query: 446 taatcgatttctttttgtagtttggtacatttgaccgagagtgagttgtaattttgctgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18745 taatcgatttctttttgtagtttggtacatttgaccgagagtgagttgtaattttgctgt 18804
Query: 506 aattgttcaaagtttatgtctgaaatatctgaggaagtgcttgagaccctatagctgttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 18805 aattgttcaaagtttatgtctgaaatatctgaggaagtgcttgagaccctagagctgttt 18864
Query: 566 ctcgatgcgttacgggagcttggttggctaccaacatgtactacgcggaacgggttgctc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18865 ctcgatgcgttacgggagcttggttggctaccaacatgtactacgcggaacgggttgctc 18924
Query: 626 ttcggcgtgagtatacgtggtgaagtaagtatgttgcttgagtcagtgtttggtgcacga 685
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 18925 ttcggcgtgagtatacgtggtgaagtaggtatgttgcttgagtcagtgtttggtgcacga 18984
Query: 686 tggacggttccgttctgagtatggccgattgctgcaagagcagggtatgtacttgattta 745
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18985 gggacggttccgttctgagtatggccgattgctgcaggagcagggtatgtacttgattta 19044
Query: 746 tcagtgttaagtacaatcgtagctgctgctgctgcttcattctctttctgtgctggtggg 805
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct: 19045 tcagtgttaggtacaatcgtagctgctgctgctgcttcatcctc-ttctgtgctggt-gg 19102
Query: 806 agacttcgatcttcttcaaaaggtatcttcttcgctgggaacaaagtttacggaaaacaa 865
|||||||||||||| ||| ||||||| |||||||| |||||| || |||||| |||||
Sbjct: 19103 agacttcgatcttc-tcagaaggtattctcttcgct-ggaacagaggttacgg-aaacag 19159
Query: 866 cggg-atagcttnctcagcagttgggttcattttgtact 903
|||| ||||||| |||||||||| |||||| ||||||||
Sbjct: 19160 cgggaatagctttctcagcagtt-ggttcagtttgtact 19197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6417
Number of Sequences: 1807
Number of extensions: 6417
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)