BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB03RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 910 0.0
3x_Contig273 347 2e-95
3x_Contig1214 161 3e-39
>3x_Contig1338
Length = 8134
Score = 910 bits (459), Expect = 0.0
Identities = 549/573 (95%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 321 cacaaacaaaaagattggagtagttacaactgctaatgaaaatagaacagtattaccagt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8102 cacaaacaaaaagattggagtagttacaactgctaatgaaaatagaacagtattaccagt 8043
Query: 381 gtggtataatggtttatcattttctctgtagatctgagcggaatagatagccccaacctg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8042 gtggtataatggtttatcattttctctgtagatctgagcggaatagatagccccaacctg 7983
Query: 441 gacagccatattatacaatgcagaactcaaagctctggttttgatggagttggaatttct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7982 gacagccatattatacaatgcagaactcaaagctctggttttgatggagttggaatttct 7923
Query: 501 ggagacccaactgacacaaattgcgtggacatatggggaacctagcaatagtgtacataa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7922 ggagacccaactgacacaaattgcgtggacatatggggaacctagcaatagtgtacataa 7863
Query: 561 tgcaaacgtatgccaagcttcaactagggaccccttccaccatcttagaatagcgaggaa 620
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7862 tgcaaacgtaggccaagcttcaactagggaccccttccaccatcttagaatagcgaggaa 7803
Query: 621 gaaggcatntcatacagctgagatgatacccatataggctctctgtttgactcgttctga 680
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 gaaggcattccatacagctgagatgatacccatataggctctctgtttgactcgttctga 7743
Query: 681 gaaccacgtgattccgag-agggaaatgatatgaataacctgatatgggatagaaagtag 739
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 7742 gaaccacgtgattccgagaaggaaaatgatatgaataacctgatatggaatagaaagtag 7683
Query: 740 ctgcacattgaatgtgctgaaccccacagattttagagttagggtgagataatgtgttta 799
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 7682 ctgcacattgaatgtgctgaaccccacagattttagagttagggtgagat-atgttgtta 7624
Query: 800 gaactttcgtgggcacattatgcattctacccaatgaaagtaaattgcccctnaatcact 859
|||| ||||| |||||| || ||| || |||||||| |||||||||| || | ||||| |
Sbjct: 7623 gaacattcgttggcaca-taagcaatcaacccaatg-aagtaaattggccataaatca-t 7567
Query: 860 attcaagaatggcagaccaaatcaatttgaaag 892
| ||| |||||||||||||||||||||||||
Sbjct: 7566 aatcagagatggcagaccaaatcaatttgaaag 7534
>3x_Contig273
Length = 1810
Score = 347 bits (175), Expect = 2e-95
Identities = 193/199 (96%)
Strand = Plus / Minus
Query: 47 tgagttcgattcaaaagaaccaaaggacaattttttttcatatataaagtatagagaaag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgagttcgattcaaaagaaccaaaggacaattttttttcatatataaagtatagagaaag 280
Query: 107 tgtaaattttggtgtaagtgcgatgtcattgaaatgaaataaataaaacaattcacaaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtaaattttggtgtaagtgcgatgtcattgaaatgaaataaataaaacaattcacaaaa 220
Query: 167 tagagatctaattagaagtttactcagcaaatctaaagtctaatctcttattagccgtat 226
||||||||||||||||||||||||||||||||||||||| | || | |||||||| ||||
Sbjct: 219 tagagatctaattagaagtttactcagcaaatctaaagtatcatatattattagcagtat 160
Query: 227 cagtggtattatgaatata 245
||||||||||||||||||
Sbjct: 159 aagtggtattatgaatata 141
>3x_Contig1214
Length = 6334
Score = 161 bits (81), Expect = 3e-39
Identities = 195/233 (83%)
Strand = Plus / Minus
Query: 396 atcattttctctgtagatctgagcggaatagatagccccaacctggacagccatattata 455
|||||||| ||||||||| |||| |||||| || || || || || || |||||||||||
Sbjct: 846 atcattttttctgtagatttgagtggaataaattgcacctacttgaacggccatattata 787
Query: 456 caatgcagaactcaaagctctggttttgatggagttggaatttctggagacccaactgac 515
||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||
Sbjct: 786 caatgcagaactcaaagctctagttttgatagaattggagtttctagagacccaactaac 727
Query: 516 acaaattgcgtggacatatggggaacctagcaatagtgtacataatgcaaacgtatgcca 575
||| ||||| || || ||||| ||| || |||| |||||| || || || ||| ||||
Sbjct: 726 acagattgcatgcacgtatggaccacccagtaataatgtacacaacgcgaatgtaggcca 667
Query: 576 agcttcaactagggaccccttccaccatcttagaatagcgaggaagaaggcat 628
|| ||||||||||| ||||||||||||||||||| | | ||||| |||||||
Sbjct: 666 tgcctcaactagggatcccttccaccatcttagaacaccaaggaacaaggcat 614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7142
Number of Sequences: 1807
Number of extensions: 7142
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 3
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)