BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB04FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1358 1487 0.0
>3x_Contig1358
Length = 7912
Score = 1487 bits (750), Expect = 0.0
Identities = 804/817 (98%), Gaps = 5/817 (0%)
Strand = Plus / Plus
Query: 86 tggcaacaacttcagttttatttggatccatgatcttgttcgacttacttagaggatttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tggcaacaacttcagttttatttggatccatgatcttgttcgacttacttagaggatttg 981
Query: 146 ttctggatgtggctttccaaatcatctacacttttgctagtgaaagccctgattccaaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ttctggatgtggctttccaaatcatctacacttttgctagtgaaagccctgattccaaaa 1041
Query: 206 tgttcaagtttgctgtgcaggcattgtatgcattcagaatgcgccttaacgagtactctc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 tgttcaagtttgctgtgcaggcattgtatgcattcagaatgcgccttaacgagtactctc 1101
Query: 266 cattctgtaagcgtttgctagacgagattccaggtttgcagactcaaccacaaattcaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 cattctgtaagcgtttgctagacgagattccaggtttgcagactcaaccacaaattcaac 1161
Query: 326 agattttgacagaatcagctgcaaatccaaacgtttcgattccagagcaaaaggctccag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 agattttgacagaatcagctgcaaatccaaacgtttcgattccagagcaaaaggctccag 1221
Query: 386 ccttagtagagttgaattactttaacatcaatgaggtcatcagtccagtaacacaagagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 ccttagtagagttgaattactttaacatcaatgaggtcatcagtccagtaacacaagagg 1281
Query: 446 ttccgcctagagaagttactgaggcaatcttattcaacgtaaacaacataacaatgagta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 ttccgcctagagaagttactgaggcaatcttattcaacgtaaacaacataacaatgagta 1341
Query: 506 attttgacacgaagatcgtcgaattaaaagctcttttggaagaaaaatactaccaatggt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 attttgacacgaagatcgtcgaattaaaagctcttttggaagaaaaatactaccaatggt 1401
Query: 566 tctcgaattatttggtaaatcagagatccaaaactgaaccaaattatcatcccttatatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 tctcgaattatttggtaaatcagagatccaaaactgaaccaaattatcatcccttatatg 1461
Query: 626 ctaaaatgttaaaaataatcgattcaaagactttacatgcatatatgttgaacttcacct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 ctaaaatgttaaaaataatcgattcaaagactttacatgcatatatgttgaacttcacct 1521
Query: 686 atanacaattgtttattatgttgtcaactaaagaattgggacaaactgaaaagactcaca 745
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ataaacaattgtttattatgttgtcaactaaagaattgggacaaactgaaaagactcaca 1581
Query: 746 tngaaaaattatcctcatggntaggttcaattacgctttctcttgacatacccaataaaa 805
| |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1582 tgaaaaatttatcctcatggttaggttcaattacgctttctcttgacata-ccaataaaa 1640
Query: 806 cat-agcatattgctttttanagagctattgttagatgcccac-aaaatgataggnttac 863
||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||| | ||
Sbjct: 1641 cataagcatattgc-ttttagagagctattgttagatgcccacaaaaatgataggttaac 1699
Query: 864 tgtagttattccgtttgttgcccaggattataatgca 900
|||||||||||||||||||| ||||||||||||||||
Sbjct: 1700 tgtagttattccgtttgttg-ccaggattataatgca 1735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6108
Number of Sequences: 1807
Number of extensions: 6108
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)