BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1526 0.0
>3x_Contig1807
Length = 66587
Score = 1526 bits (770), Expect = 0.0
Identities = 852/873 (97%), Gaps = 5/873 (0%)
Strand = Plus / Plus
Query: 49 gaggcacttgcaactcgaaaagacttactatcaatcgcatggtttactgcaaaccctaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34901 gaggcacttgcaactcgaaaagacttactatcaatcgcatggtttactgcaaaccctaat 34960
Query: 109 ccaattgttctggaagctagatgtggtcggtgtactcttgctcacagtgaccttgggctg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34961 ccaattgttctggaagctagatgtggtcggtgtactcttgctcacagtgaccttgggctg 35020
Query: 169 tatcctagtaccattgacactagctgggggagtgtctcaaaagtggaataaccctcacgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35021 tatcctagtaccattgacactagctgggggagtgtctcaaaagtggaataaccctcacgt 35080
Query: 229 gattgcacctttcgtgctaggtttcgtgctattgccaatattcgtggtatgggaatcgaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35081 gattgcacctttcgtgctaggtttcgtgctattgccaatattcgtggtatgggaatcgaa 35140
Query: 289 atgggcattggaccccatcgctccttttgagttgttgaaggaccgtggtgtgtggtctgc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35141 atgggcattggaccccatcgctccttttgagttgttgaaggaccgtggtgtgtggtctgc 35200
Query: 349 cttaacgatccagttcttaatttactttgtttaccagatggccgttggttacttgtatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35201 cttaacgatccagttcttaatttactttgtttaccagatggccgttggttacttgtatac 35260
Query: 409 tatcttagtgattgctgtggatgaatcgacaacgtcagcgacaagaattaccagtgttta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35261 tatcttagtgattgctgtggatgaatcgacaacgtcagcgacaagaattaccagtgttta 35320
Query: 469 cagtttcaccgcagctgtagcatcacctttctttgccttggttgtgactaggtcgaagcg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35321 cagtttcaccgcagctgtagcatcacctttctttgccttggttgtgactaggtcgaagcg 35380
Query: 529 attgaaaccatacattatcactgggtgttccttgtggatggtagccatgggtatccttta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35381 attgaaaccatacattatcactgggtgttccttgtggatggtagccatgggtatccttta 35440
Query: 589 tcatttcagaagtggtaaggattcagacaaaggtatcattggaggtttagtgttatgggg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35441 tcatttcagaagtggtaaggattcagacaaaggtatcattggaggtttagtgttatgggg 35500
Query: 649 tttaaccagtaccttattcacgtacccggtgactgtgtccttacaatcaatcaccttcca 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35501 tttaaccagtaccttattcacgtacccggtgactgtgtccttacaatcaatcacctccca 35560
Query: 709 tgaaaacatggcctcagtaaccgcgttgaactatacaatttacagaataggtggtgccgg 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 35561 tgaaaacatggcctcagtaaccgcgttgaactatacaatttacagaataggtggtgcc-g 35619
Query: 769 ttgcgtctgcagcattctgtgcccttttggacgcagctgttgtacaaggaaattttaaag 828
|||||||||||||| |||| || ||||||||||||||||||||||| || | ||||||
Sbjct: 35620 ttgcgtctgcagca-tctggtgccatttggacgcagctgttgtacaagaaattattaaag 35678
Query: 829 gaaatgaatgggggatgctacttttactactggcccctatgggaatnccttttgatttca 888
||||||||| || ||||||||||| |||||| | ||||| |||| |||||||||||||
Sbjct: 35679 gaaatgaat-ggtgatgctactttagctactgccgcctat-ggaagtccttttgatttca 35736
Query: 889 ttttaaatta-ccatggggtaccccaatgagag 920
||||| |||| ||||||||||||||||||||||
Sbjct: 35737 ttttagattacccatggggtaccccaatgagag 35769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4941
Number of Sequences: 1807
Number of extensions: 4941
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)