BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1451 0.0
3x_Contig352 184 2e-46
>3x_Contig1475
Length = 10676
Score = 1451 bits (732), Expect = 0.0
Identities = 771/779 (98%), Gaps = 4/779 (0%)
Strand = Plus / Plus
Query: 86 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9886 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 9945
Query: 146 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9946 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 10005
Query: 206 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataacgacaatgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10006 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataacgacaatgg 10065
Query: 266 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10066 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 10125
Query: 326 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10126 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 10185
Query: 386 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10186 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 10245
Query: 446 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10246 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 10305
Query: 506 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10306 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 10365
Query: 566 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10366 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 10425
Query: 626 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10426 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 10485
Query: 686 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgtncatta 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 10486 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgt-catta 10544
Query: 746 -catctctgatnacgtgagcagatggagtggatagcgatttcaacgagttcattgtctta 804
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10545 ccatctctgataacgtgagcagatggagtggatagcgatttcaacgagttcattgtctta 10604
Query: 805 aaagcattatatttctgatatgcaccgatgacgaccgttgatcccaacga-caaaggca 862
|||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 10605 gaagcattatattcttgatatgcaccgatgacga-cgttgatcccaacgagcaaaggca 10662
>3x_Contig352
Length = 1459
Score = 184 bits (93), Expect = 2e-46
Identities = 258/313 (82%)
Strand = Plus / Plus
Query: 86 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 145
|||||||||| |||||||||| ||||||| ||| || ||||| |||||||| ||||| |
Sbjct: 985 ccaaagaatctaatttacgaatgataacatgtctagttgccatcactttagcgcctgcag 1044
Query: 146 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 205
|||||||||| || | || || ||||| || ||||| ||||| |||| || |||||||
Sbjct: 1045 acatggtgattgttagaacaacgaccaatgacgatgggatcattgaaagtgcgacacaaa 1104
Query: 206 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataacgacaatgg 265
|||||||||| |||||||| ||||| ||| || | ||||||||||||||||||||||| |
Sbjct: 1105 tggcatagatggcaacttgtttgttcaccttaaacttttgagtacccataacgacaatag 1164
Query: 266 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 325
|||| || || ||||| ||||| |||| |||||||||||||||||| |||||||| || |
Sbjct: 1165 cgaaaatgactgcaaccacgaataatagaatagccaattgagacaacttacggtgcaagg 1224
Query: 326 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 385
| || ||||| | || || ||||| | ||||||| ||| ||||||| ||||| || |
Sbjct: 1225 gggtaccgacgctggttcccaggaacgtgccgatagattctctcaatgtaatccataagt 1284
Query: 386 tttgtccaaatga 398
|| ||||||||||
Sbjct: 1285 ttcgtccaaatga 1297
Score = 121 bits (61), Expect = 3e-27
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 442 gactttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagct 501
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 1340 gacttcgctatcttaccaatttcagtgttcaaagctgtctttataacaataccagtcgct 1399
Query: 502 ctacccttggtaacagtagatgctgcaaaggcaaggtttaa 542
|| ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 1400 ctgcccttcgtaactgtagatgctgc-gaggcaaggtttaa 1439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5939
Number of Sequences: 1807
Number of extensions: 5939
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)