BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig773 1582 0.0
>3x_Contig773
Length = 3107
Score = 1582 bits (798), Expect = 0.0
Identities = 855/867 (98%), Gaps = 7/867 (0%)
Strand = Plus / Minus
Query: 43 gcttttccaaagtattcacatcaaataaatcactaaattttgatgttcttggtgc-actc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 972 gcttttccaaagtattcacatcaaataaatcactaaattttgatgttcttggtgctactc 913
Query: 102 tcgaatcctggaaaagaatcatttcgaagatttaaacatagttcagttaactgtaacttt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tcgaatcctggaaaagaatcatttcgaagatttaaacatagttcagttaactgtaacttt 853
Query: 162 tccgatagtgggacaaagtttgggaaccacatgagtgcatcaaagtatattgtaaggctc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tccgatagtgggacaaagtttgggaaccacatgagtgcatcaaagtatattgtaaggctc 793
Query: 222 ttgatattggcccaattaaatttgtttgccatagatgttatgctagtcaagtacgaagca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttgatattggcccaattaaatttgtttgccatagatgttatgctagtcaagtacgaagca 733
Query: 282 tatgcaggccccggaagttttgcatgcgggactatgtctaaggattttaactgcgatgca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tatgcaggccccggaagttttgcatgcgggactatgtctaaggattttaactgcgatgca 673
Query: 342 agctgagacttggagatcgtttcgaatgtttcgatatatagaaagttctcaaaataagta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agctgagacttggagatcgtttcgaatgtttcgatatatagaaagttctcaaaataagta 613
Query: 402 atatttgtcgcatgttcacatatgagcccggtaaaccttgtcaataaattccgatttaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atatttgtcgcatgttcacatatgagcccggtaaaccttgtcaataaattccgatttaaa 553
Query: 462 tgccaagtacagtgtatcttatttattagcttgcaaagttcaacgttcttgcttagagta 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgccaagtacagtgtatcttatttattagcttgcaaagttcaacgttcttgcttagagta 493
Query: 522 ttgaatagcgcttgaaacttaactgatgatcgccctgcttcagaaaacacaagcgtagac 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgaatagcgcttgaaacttaactgatgatcgccctgcttcagaaaacacaagcgtagac 433
Query: 582 cagttgttgccaaaataaggatattctgggatgtgtataattggtctttcgttcaaatat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagttgttgccaaaataaggatattctgggatgtgtataattggtctttcgttcaaatat 373
Query: 642 aggttttggtagagtgacgccactgttttatcgtaaagttggtgagataccatcatcaag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggttttggtagagtgacgccactgttttatcgtaaagttggtgagataccatcatcaag 313
Query: 702 gatgattttttcgatttgagataaatatcccagtatctcaagccatatttcgttcggaag 761
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gatga-tttttcgatttgagataaatatcccagtatctcaagccatatttcgttcggaag 254
Query: 762 ctgttcgagcatttgtgctgttatattagtgctgntttcatcaattga-tgcgttggtgc 820
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct: 253 ctgttcgagcatttgtgctgttatattagtgctgttttcatcaattgagtgcgttgttgc 194
Query: 821 atttcgtgtgcaatag--taacaagcgtttcctgaggctaa-gtagcatttgtattaatn 877
||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 193 attccgtgtgcaaaagattaacaagcgtttcctgaggctaaggtagcatttgtattaatt 134
Query: 878 catcagtagcttac-aatgattggcaa 903
|||||||||||||| ||||||||||||
Sbjct: 133 catcagtagcttacaaatgattggcaa 107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6019
Number of Sequences: 1807
Number of extensions: 6019
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)