BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB06FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1458 1298 0.0
>3x_Contig1458
Length = 9817
Score = 1298 bits (655), Expect = 0.0
Identities = 772/802 (96%), Gaps = 7/802 (0%)
Strand = Plus / Minus
Query: 89 acgtacggcaacaacattcttgattcc-caacatctttgttcttaaatttaaaaataaca 147
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6720 acgtacggcaacaacattcttgattccacaacatctttgttcttaaatttaaaaataaca 6661
Query: 148 gcattccagtttctaccaactcgttgaaactatggtacacataaatattaccgtccaagc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6660 gcattccagtttctaccaactcgttgaaactatggtacacataaatattaccgtccaagc 6601
Query: 208 cctctgattgtgctttcacttcaagaacatcaacaatttatccagaataaaaacattgat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6600 cctctgattgtgctttcacttcaagaacatcaacaatttatccagaataaaaacattgat 6541
Query: 268 aaaaaaatttaaaactgtgtgcgtatcggttaagctaatgtgaaacaacaagtcgcattc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6540 aaaaaaatttaaaactgtgtgcgtatcggttaagctaatgtgaaacaacaagtcgcattc 6481
Query: 328 gtgatatttcaggataatacccaaacaagaacggcaatgagtatttgggttttatatgtc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6480 gtgatatttcaggataatacccaaacaagaacggcaatgagtatttgggttttatatgtc 6421
Query: 388 aaatgttagaagcttcatttttgttagattttttttttttttttttttttttggaatgtt 447
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 6420 aaatgttagaagcttcatttttgtttgatttttttttttttttttttttttttgaatgtt 6361
Query: 448 gaaatttcgtgatctttcatttatacgcgaaacttgatatgttattttggaatttaacat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6360 gaaatttcgtgatctttcatttatacgcgaaacttgatatgttattttggaatttaacat 6301
Query: 508 taaacaaaggaaatccgcgaaaagatgataggaacggtcaacccaaaaaccgtggaggct 567
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6300 taaacaaaggaaatccgcgaaaagatgagaggaacggtcaacccaaaaaccgtggaggct 6241
Query: 568 ttttgttttacaggggagaatgatagccatgcatgcgttgctaaagagggtatgcaagaa 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6240 ttttgttttacaggggagaatgatagccatgcatgcgttgctaaagagggtatgcaagag 6181
Query: 628 gtaaatattctcccatgtcagttaaaaagtatatatactgatggatttcatagttactca 687
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6180 taaaatatctccccatgtcagttaaaaagtatatatactgatggatttcatagttactca 6121
Query: 688 tgggtatttctaatgcttcaataagccgggtctcaggttctttcanaagtttacatttca 747
||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 6120 tgggtatttctaatgcttcaataagcccggtctcagggtctttcagaagtttacatttca 6061
Query: 748 acggtcatcttttgcttgttgaatcttattcttcataagccattattccaactttaatcg 807
| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||
Sbjct: 6060 cggttcatcttttgcttgttg-atcttattcttcataagccaattatccaactttaatcg 6002
Query: 808 ctcactagttcactggtgcctttggttgacattattctacaccggccctccatttttttg 867
||||||||||||||||| ||| | |||||||||| |||||||| | ||| |||||||||
Sbjct: 6001 ctcactagttcactggt-cctct-gttgacatta-tctacacctg-ccttcattttttt- 5947
Query: 868 gaacttattattgacaataagt 889
|| |||||||| ||||||||||
Sbjct: 5946 gagcttattatagacaataagt 5925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,802
Number of Sequences: 1807
Number of extensions: 25802
Number of successful extensions: 5480
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)