BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB06RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1372 0.0
>3x_Contig1787
Length = 34189
Score = 1372 bits (692), Expect = 0.0
Identities = 798/829 (96%), Gaps = 4/829 (0%)
Strand = Plus / Plus
Query: 48 ctgaaggactcattttagagatttcaagagctttttggcaccacataataccttgggact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 ctgaaggactcattttagagatttcaagagctttttggcaccacataataccttgggact 3908
Query: 108 tattatcagtgattatataagagattcctcgattccaaatgactgtagtcaaccattcaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3909 tattatcagtgattatataagagattcctcgattccaaatgactgtagtcaaccattcaa 3968
Query: 168 tttcggtagtacaataattattagcgtgttttattctgatctgaaattgtgacaaaattg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3969 tttcggtagtacaataattattagcgtgttttattctgatctgaaattgtgacaaaattg 4028
Query: 228 ttaaacagttctgttcatccgtgccctgggagacctctagtaaggaccttatccattgac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 ttaaacagttctgttcatccgtgccctgggagacctctagtaaggaccttatccattgac 4088
Query: 288 tcaagatatcatccgaaatagatgtatttcccatatttctgtcaattaggcatttcaaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 tcaagatatcatccgaaatagatgtatttcccatatttctgtcaattaggcatttcaaaa 4148
Query: 348 gttctgttgcaaaggcgtcagacatgatcttttgtgtatttgtgaatacatcccaaacga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gttctgttgcaaaggcgtcagacatgatcttttgtgtatttgtgaatacatcccaaacga 4208
Query: 408 gttcgtcgactttatagtcggggtttgtagcagtagcgtctaaaatgtgtttcaatagca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 gttcgtcgactttatagtcggggtttgtagcagtagcgtctaaaatgtgtttcaatagca 4268
Query: 468 gtaaatctccgagattcatcgctgcttcgaatgatcgcacgataatatcgataaatgtat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 gtaaatctccgagattcatcgctgcttcgaatgatcgcacgataatatcgataaatgtat 4328
Query: 528 tgtgtacttcttcagatgtcaacaccgattgttccttatcttt-gaagtgttaaagaaat 586
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4329 tgtgtacttcttcagatgtcaacaccgattgttccttatctttggaagtgttaaagaaat 4388
Query: 587 ccttgttttgtgctataagtgcgaagctactttccttcagagaaat-cagttcgatgtcc 645
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 4389 ccttgttttgtgctataagtgcgaggctactttccttcagagaaatccagttcgatgtcc 4448
Query: 646 ggtgcaaaagtttccaagataggacgtcagntctaaatct-ccattaacggtagtacaac 704
|||||||||||| | |||| |||||||||| ||| ||||| ||| |||||||||||||||
Sbjct: 4449 ggtgcaaaagttccaaagaaaggacgtcagttct-aatctcccaataacggtagtacaac 4507
Query: 705 ttcttatggtcatcccacttctncttaaggatatacttccagtattattttgcatcggga 764
||||||||||||||| ||| || |||| | ||||||| | ||||| |||| ||||| |
Sbjct: 4508 ttcttatggtcatccaactcctccttaggaatatactccaagtataatttgcaatcggaa 4567
Query: 765 atcaaatgatctanatttgttattctggcttcatccaatagtttcctcaccaaattgttg 824
||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||| |
Sbjct: 4568 atcaaatgatctagatatgttattctgccttcattcaatagtttcctcaccaaattgtag 4627
Query: 825 caggctgatgccaaccattctttatcatcaattggtattgcttcatcat 873
|| |||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct: 4628 caagctgatgcaaaccattctatatcatcaattgatattgcttcatcat 4676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6306
Number of Sequences: 1807
Number of extensions: 6306
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)