BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB07FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1352 0.0
>3x_Contig1793
Length = 40499
Score = 1352 bits (682), Expect = 0.0
Identities = 766/788 (97%), Gaps = 5/788 (0%)
Strand = Plus / Minus
Query: 86 ttgggactcatcgggcaaagtagggggaaccttcgctgtagtaggggtagtggtagctgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5605 ttgggactcatcgggcaaagtagggggaaccttcgctgtagtaggggtagtggtagctgc 5546
Query: 146 aatactcgctattctgctcatattattcctcaagtacagaaagaacaaagaacaacaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5545 aatactcgctattctgctcatattattcctcaagtacagaaagaacaaagaacaacaaga 5486
Query: 206 ctttgaaaagacatacgatgaggtgaaaagatcagctactggagcatactctacttcgtc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5485 ctttgaaaagacatacgatgaggtgaaaagatcagctactggagcatactcta-ttcgtc 5427
Query: 266 ttcttcccaaatacatagcagtggcggtggtggtggtgcagcaccctttgtttacacaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 ttcttcccaaatacatagcagtggcggtggtggtggtgcagcaccctttgtttacacaga 5367
Query: 326 tgaaaagggtattgtgaacacgacgacaaccagtcctaaatcgccgacatcaaacaccca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5366 tgaaaagggtattgtgaacacgacgacaaccagtcctaaatcgccgacatcaaacaccca 5307
Query: 386 gcaacccgttaatacccccgagtctgaagtatcagaacctgttgtccttgaccaaaggct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5306 gcaacccgttaatacccccgagtctgaagtatcagaacctgttgtccttgaccaaaggct 5247
Query: 446 ggatccacaacatttaatgtcgcaatgggaaacgaacggaagtagagtatcactcgctga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5246 ggatccacaacatttaatgtcgcaatgggaaacgaacggaagtagagtatcactcgctga 5187
Query: 506 cgatgttgactattcgagaaaagtattaagagtaatcaacgaatgattgtgcgcctacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5186 cgatgttgactattcgagaaaagtattaagagtaatcaacgaatgattgtgcgcctacaa 5127
Query: 566 ccatcgcattaagacacacagaaatacaactaanaactaaaaaaatgtaaaagctattac 625
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5126 ccatcgcattaagacacacagaaatacaactaaaaactaaaaaaatgtaaaagctattac 5067
Query: 626 actaataatacctacaattgaaaacgtaatactacctctctcatcacatctattaaatac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5066 actaataatacctacaattgaaaacgtaatactacctctctcatcacatctattaaatac 5007
Query: 686 acttaaatgtcatcttccatatttatgcatattccgtaattgttgactgctcgctttttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5006 acttaaatgtcatcttccatatttatgcatattccgtaattgttgactgctcgctttttc 4947
Query: 746 ag-ttncctttatatatagttttaattattcgtacactcacactattgaaaattaggtgc 804
|| || |||| ||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 4946 agtttcccttaatatatagttttaataatcgttacactcacacta-tgaaaattaggtgc 4888
Query: 805 caaatccttcatattatgaaatatgtttgtgaaaatacagaagacttctacaacatgntt 864
|| | | ||||| ||||||||||| |||| ||||||| |||||||||| ||||| ||
Sbjct: 4887 aaatacatacatataatgaaatatgtatgtg-aaatacaagagacttctaccacatg-tt 4830
Query: 865 ttaacgtt 872
||||||||
Sbjct: 4829 ttaacgtt 4822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5666
Number of Sequences: 1807
Number of extensions: 5666
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)