BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB07RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig391 747 0.0
3x_Contig1157 208 1e-53
>3x_Contig391
Length = 1411
Score = 747 bits (377), Expect = 0.0
Identities = 384/385 (99%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 48 aatgaggatcgtttttccttgattggagaggccaacccggtaacagtttatcattgaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgaggatcgtttttccttgattggagaggccaacccggtaacagtttatcattgaaga 325
Query: 108 gttgtccttcatctcatgtgtatagcccaaattttggtgaacagaaaatttttagaatat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgtccttcatctcatgtgtatagcccaaattttggtgaacagaaaatttttagaatat 265
Query: 168 ctacatatcccacccgtacatcacaccgtcagtgtttggaaagaaatagccaacggtgtc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctacatatcccacccgtacatcacaccgtcagtgtttggaaagaaatagccaacggtgtc 205
Query: 228 tttatcagcctagaatgaagcgaaagcagtgttggaagtaagctgctagatgcagtttca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttatcagcctagaatgaagcgaaagcagtgttggaagtaagctgctagatgcagtttca 145
Query: 288 tataatcttctaactgtacgccttctcaagccagggtcctataatggcaatctccttacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tataatcttctaactgtacgccttctcaagccagggtcctataatggcaatctccttacc 85
Query: 348 tcttctcttttgttttgtaccttatcacttttctatcaaacctgtggaaatatttcgtca 407
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 84 tcttctcttttgttttgtaccttatcacttttctatcaaacctg-ggaaatatttcgtca 26
Query: 408 atgacattttaagatctttcaatat 432
|||||||||||||||||||||||||
Sbjct: 25 atgacattttaagatctttcaatat 1
>3x_Contig1157
Length = 4825
Score = 208 bits (105), Expect = 1e-53
Identities = 194/215 (90%), Gaps = 8/215 (3%)
Strand = Plus / Minus
Query: 658 tttacttgttggtttagtggg--actgctatttttgtatag-cagtcgactctttgga-c 713
|||||||||||||||||| || |||||||||||||| || |||||||||||||||| |
Sbjct: 4814 tttacttgttggtttagttggcgactgctatttttgttaaggcagtcgactctttggaac 4755
Query: 714 agnatcagcctaaaa-cacgtacaatttctctgaatt-gacactgtgatgattggtctaa 771
|| | ||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct: 4754 agaacaagcctaaaaacacgtacacattctctgaatttgacactgtgatgagtggtctaa 4695
Query: 772 ga-gaagattttcgatctttgagcaggatgatttaaatttaagatgtgtgcaacccggat 830
|| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 4694 gaagaagagtttcgatctttgagcaagatgatttaaatttaagatgtgtgcaaaccggag 4635
Query: 831 ttgcaaccaagaaactgaaaattccccgaagatgc 865
||||||||||||||||| |||||||||||||||||
Sbjct: 4634 ttgcaaccaagaaactg-aaattccccgaagatgc 4601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6617
Number of Sequences: 1807
Number of extensions: 6617
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)