BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB09FM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig380 936 0.0
>3x_Contig380
Length = 1539
Score = 936 bits (472), Expect = 0.0
Identities = 551/570 (96%), Gaps = 6/570 (1%)
Strand = Plus / Plus
Query: 290 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcagcattacctgaaaatagggctattcatgtgggtacaattcaattattaggtagag 60
Query: 350 gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgtggtggaaatacgtgggttaacccaaggggagttcttgcgtcaacaactgcaatta 120
Query: 410 atttacctgctgtatcaccaagttctggagaaagaactccgatcgttttcgtgcaatatc 469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 atttacctgctgtatcaccaagttctggagaaaga-ctccgatcgttttcgtgcaatatc 179
Query: 470 tagctatgttagcttactgtaaagccatccgcacatttgctcctggctatgaagatntac 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 tagctatgttagcttactgtaaagccatccgcacatttgctcctggctatgaagatttac 239
Query: 530 cagtgaagatcaaatggcctaacgatctctatgcaatgaaacctcaatattactataaca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagtgaagatcaaatggcctaacgatctctatgcaatgaaacctcaatattactataaca 299
Query: 590 ataacatgaaacttttggggaaagaattccccaatggattaattccgcttgacgacgtcg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataacatgaaacttttggggaaagaattccccaatggattaattccgcttgacgacgtcg 359
Query: 650 acccggcatttgtaaaggtatctggtcttttggt-accacaaatttcgtatcagg-atat 707
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 360 acccggcatttgtaaaggtatctggtcttttggtaaccacaaatttcgtatcaggaaaat 419
Query: 708 actccttattattgggatgttggggtttaccgtacgaacgaagctccaacgactttcttg 767
||||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||
Sbjct: 420 actccttattattgggatg-tggggttaacgtaacgaacgaagctccaacgacttccttg 478
Query: 768 gcgacatgggtcaaaatctggaataatgaaagagatgcttttagaatgccgcactttacg 827
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct: 479 gcgacatgggtcaaaatcttgaataatgaaagagatgctttaggaatgccgcac-ttacc 537
Query: 828 gncaattgatc-tgaaatacttttagcgaa 856
| ||||||||| |||||||||| |||||||
Sbjct: 538 gccaattgatcatgaaatacttctagcgaa 567
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5591
Number of Sequences: 1807
Number of extensions: 5591
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)